Plant FIBer expression Database

Potri.010G117500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G15110 716 / 0 PSS1 phosphatidylserine synthase 1, phosphatidyl serine synthase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G126100
[exp]
806 / 0 AT1G15110 725 / 0.0 phosphatidylserine synthase 1, phosphatidyl serine synthase family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034618
[exp]
734 / 0 AT1G15110 724 / 0.0 phosphatidylserine synthase 1, phosphatidyl serine synthase family protein (.1.2)
Lus10000366
[exp]
622 / 0 AT1G15110 617 / 0.0 phosphatidylserine synthase 1, phosphatidyl serine synthase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03034 PSS Phosphatidyl serine synthase
Representative CDS sequence
>Potri.010G117500.3 pacid=42799498 polypeptide=Potri.010G117500.3.p locus=Potri.010G117500 ID=Potri.010G117500.3.v4.1 annot-version=v4.1
ATGGAGCTGAATGGTCAAACAAGAGTGAGAAGAAAGGACCATTTTGCTCATACAAACGGTGATTTAGCATTACCAAGTGTTGGTGATGTAGATCCCTGGA
CTGCATGGGCATATAAGCCTCGAACTATTTCGTTGTTACTTATTGGTGCTTGCTTTCTAATATGGGCAAGTGGAGCCCTAGATCCAGAGAGCTGCACATC
TGGTGATGTTGTTACATCTGTGAAAAGGGGTATATGGGCAATGACTGCAGTTTTTCTTGGTTATTGCTTGCTACAGGCCCCTTCAACGGTTCTAATAAGG
CCACATCCAGCAATTTGGCGCTTAGTTCATGGATTGGCCATTGTTTATCTTGTTGCCCTCACATTTCTGCTTTTTCAGAAGCGTGATGATGCGCGGCAAT
TTATGAAGTTTCTCCATCCTGACCTTGGAATTGAACTACCTGAAAGATCATATGGTGCTGATTGTCGCATTTATGTGCCTGAAAATCCTACAAGCAAGTT
TAAGAACGTTTTGGACACTCTTTTTGATGAATTTGTTCTAGCACATATCTTTGGATGGTGGGGCAAGGCTATATTAATCCGTAATCAGCCACTTCTATGG
GTATTGTCAATTGGTTTTGAGCTGATGGAGTTTACCTTCCGCCACATGCTACCAAACTTCAATGAATGCTGGTGGGACAGTATCATTCTTGATATTTTGA
TATGCAATTGGTTTGGCATTTGGGCTGGAATGCATACAGTCGGGTATTTTGATGGAAAAACATACGAGTGGGTTGGTATAAGTCGCCAACCTAATATTAT
GAGCAAGGTCAAACGGACATTGGAACAATTTACACCTGCACAGTGGGACAAAGATGAATGGCATCCCTTGCTTGGTCCATGGCGATTTATCCAAGTTCTT
AGTCTCTGTATTGTCTTCCTGACTGTAGAGCTCAACACATTCTTTTTGAAGTTTTGTCTATGGGTTCCTCCTCGGAACCCTGTAATAGTGTACAGGTTGA
TCTTGTGGTGGCTAATTGCCATACCTACAACACGTGAATACAATTCATATCTCCAAGACCGAAAGCCTGTGAAAAAGGTAGGCGCTTTTTGTTGGCTTTC
CCTTGCTATTTGCATCGTGGAACTTCTCATTTGCATCAAGTTTGGACATGGTCTTTATCCCAAACCAATGCCTGCATGGTTGGTCATCTTCTGGACATCT
GTTGGAGTTAGCCTTGTAATATTCCTGATTATGTGGTCATGGAAAAGTTTGGGAAGAAAGAGACGATGA
AA sequence
>Potri.010G117500.3 pacid=42799498 polypeptide=Potri.010G117500.3.p locus=Potri.010G117500 ID=Potri.010G117500.3.v4.1 annot-version=v4.1
MELNGQTRVRRKDHFAHTNGDLALPSVGDVDPWTAWAYKPRTISLLLIGACFLIWASGALDPESCTSGDVVTSVKRGIWAMTAVFLGYCLLQAPSTVLIR
PHPAIWRLVHGLAIVYLVALTFLLFQKRDDARQFMKFLHPDLGIELPERSYGADCRIYVPENPTSKFKNVLDTLFDEFVLAHIFGWWGKAILIRNQPLLW
VLSIGFELMEFTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTVGYFDGKTYEWVGISRQPNIMSKVKRTLEQFTPAQWDKDEWHPLLGPWRFIQVL
SLCIVFLTVELNTFFLKFCLWVPPRNPVIVYRLILWWLIAIPTTREYNSYLQDRKPVKKVGAFCWLSLAICIVELLICIKFGHGLYPKPMPAWLVIFWTS
VGVSLVIFLIMWSWKSLGRKRR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G15110 PSS1 phosphatidylserine synthase 1,... Potri.010G117500
[exp]
0 1
AT3G51000 alpha/beta-Hydrolases superfam... Potri.011G048000
[exp]
4.24 0.7242
AT4G00720 ASKTHETA, ATSK3... SHAGGY-LIKE PROTEIN KINASE THE... Potri.002G155000
[exp]
7.48 0.7805
AT1G13630 Tetratricopeptide repeat (TPR)... Potri.010G137200
[exp]
11.74 0.7531
AT5G17990 PAT1, TRP1 PHOSPHORIBOSYLANTHRANILATE TRA... Potri.012G082700
[exp]
12.64 0.7343
AT1G11800 endonuclease/exonuclease/phosp... Potri.004G010900
[exp]
24.24 0.7405
AT4G32870 Polyketide cyclase/dehydrase a... Potri.008G063900
[exp]
26.60 0.7297
AT3G14470 NB-ARC domain-containing disea... Potri.017G136266
[exp]
27.54 0.6822
AT3G47890 Ubiquitin carboxyl-terminal hy... Potri.017G089250
[exp]
36.87 0.7261
AT2G16230 O-Glycosyl hydrolases family 1... Potri.014G182500
[exp]
46.05 0.6970
AT2G16230 O-Glycosyl hydrolases family 1... Potri.014G184400
[exp]
47.19 0.7072

Potri.010G117500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.