Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01130 1639 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT1G48650 1514 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT5G04895 1333 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT2G35920 849 / 0 RNA helicase family protein (.1) AT1G58060 535 / 2e-167 RNA helicase family protein (.1) AT1G58050 485 / 4e-149 RNA helicase family protein (.1) AT2G47250 335 / 4e-100 RNA helicase family protein (.1) AT3G62310 334 / 6e-100 RNA helicase family protein (.1) AT5G13010 312 / 3e-88 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT1G06670 304 / 6e-85 NIH nuclear DEIH-boxhelicase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G042500 [exp] 1535 / 0 AT1G48650 1629 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Potri.010G246000 [exp] 1375 / 0 AT5G04895 1862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.008G014100 [exp] 1339 / 0 AT5G04895 1835 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G068900 [exp] 850 / 0 AT2G35920 1474 / 0.0 RNA helicase family protein (.1) Potri.004G222900 [exp] 546 / 2e-171 AT1G58060 1757 / 0.0 RNA helicase family protein (.1) Potri.014G117900 [exp] 328 / 1e-97 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.002G192500 [exp] 319 / 1e-94 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.015G008700 [exp] 313 / 1e-89 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.005G206500 [exp] 305 / 3e-86 AT2G30800 1374 / 0.0 helicase in vascular tissue and tapetum (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007938 [exp] 1731 / 0 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10013479 [exp] 1726 / 0 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009012 [exp] 1410 / 0 AT1G48650 1644 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10043459 [exp] 1335 / 0 AT5G04895 1897 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10034126 [exp] 1332 / 0 AT5G04895 1904 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009643 [exp] 1298 / 0 AT1G48650 1469 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10009022 [exp] 799 / 0 AT2G35920 1447 / 0.0 RNA helicase family protein (.1) Lus10009660 [exp] 570 / 0 AT2G35920 969 / 0.0 RNA helicase family protein (.1) Lus10001415 [exp] 311 / 2e-88 AT2G30800 1276 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10005261 [exp] 302 / 6e-88 AT3G62310 1300 / 0.0 RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [poplar] [flax] DSRM PF00035 [poplar] [flax] dsrm Double-stranded RNA binding motif CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF04408 [poplar] [flax] HA2 Helicase associated domain (HA2) CL0021 [poplar] [flax] OB PF07717 [poplar] [flax] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold
Representative CDS sequence Show only first row Show all	>Potri.010G117800.2 pacid=42798094 polypeptide=Potri.010G117800.2.p locus=Potri.010G117800 ID=Potri.010G117800.2.v4.1 annot-version=v4.1 ATGCTATCTTCTCTCCTTCATTCACCTCCCTGGCAAATTCCCCAAACCGTAAAACCCTCGACATCTGTCTCCTCCACAGCAATGAAGGACCGGTCGCCGC CTTCCTCATTAGGCGCCGTTTACGTCCCTCCACACTGCCGTATCCGCTCCCTCGTCTCCACTCCCTACTGTCACTCCTCCTCTAATGCTTCTTCTCCTTA TCCTCCAATTGGCTCCAAATTTCGCGAAAATCACAGCGAGAGCACTACTGTTTTAAACCCTAGAAACCGTCCTCCTCTTCATCAACAACAGAGAAACGGC GTCGCTGATAATAATGATTTTAACAGTAATAAGAAACCGGCACCGAAATTTGTTTCTGCCTACGATGACCGAGAATCAGAGGAAGGCTCTGATCTTGAAA CGGACTCCCCCGTGGTTCAACCTGGTGCTTACCTTTCTGATGACATTGAGGAGTGGAAACGGAAATTAACAATGCTTTTGCATGACAAGGAGAAGCAAGA GTTGATTTCAAGAGAGAAAAAGGACCGGCGTGATTTTGAGCAAATAGCTGCTCTTGCGAGTAAAATGGGCTTGCACAGCCATTCCTATGCGAAAGTTGTT GTTTTTAGCAAGGCTCCGCTTCCAAACTACAGATTTGATTTGGATGACAAGCGTCCGCAGAGGGAGGTGAACTTACCTCTTGGTTTGCTACAAAGAGTTG ATGCTTATCTTGGAGACTACCTCTATCAAAGGTCCAGGATTAATAGTAATTTTCCAGATACATTTTCTAGATCAAGCAGTAGTAGTCTCTCCACAGATGA TGGGCTTTTTGAGCAACCTGAGCCACTGGCATCCAGTAAGGCTGTTACGGAGAAAATTCTGTGGCGGAGAAGTATGCAATTGTGTGATCAGCAACAAGCT TGGCAGGAATCTCCAGAAGGCTGCAAGATGCTTGAATTTCGTAAAACTCTTCCTGCTTACAAAGAGAAGGATGCCATATTGGCAGCCATTTCACAAAATC AGATTGTTATAATCTCTGGTGCAACTGGCTGCGGCAAAACCACGCAAATTCCACAATTCATTTTAGAATCTGAGGTAGAATCTGTTCGTGGAGCTGTTTG TAATATTATATGTACACAGCCAAGACGAATATCTGCTATGTCTGTTTCTGAAAGAATTGCTTCAGAGAGAGGGGAGAAATTGGGTGAACGTGTCGGATAC AAGGTTCGGCTTGAGGGTGTAAAGGGAAAGGATACCCACCTTCTCTTCTGTACCACTGGCATCCTGTTGAGAAGACTGCTTGTTGATAGAAGTTTAAAAG GAATAACTCATGTGATTGTGGATGAGATTCACGAACGTGGAATGAATGAGGATTTTCTGCTCATTGTCCTTAAGGATCTCCTTCCTCATCGGCCAGAACT GAAGCTGATTCTGATGAGTGCAACCCTTGATGCCGAGCTTTTCTCATCATATTTTGATGGAGCTCCAATACTACGCATTCCAGGTTTTACATTCCCGGTA CGAACTCATTTTCTGGAAAATATTCTGGAAATGACGGGTTACAGATTGACCCAATGCAACCAAATTGATGGTTATGGTCAGGAAAAGATGTGGAGGATAG GCAAACAAGCTCCGAGAAAAAGGAAGAGTCAAATTGCTTCAAGTGTTGAGGATGCTCTTAGAACAGCCGATTTTAAGGAGTACAGTAGCCAGACTCGGGA GTCTTTGTCATGTTGGAATCCTGATAGCATAGGTTTTAATCTTGTTGAATATCTCTTATGTAATATTTGTGAGAATGAGAGGCCAGGTGCTGTTCTTGTT TTCATGACGGGGTGGGATGACATAAGTTCTTTGAAGGATAAGCTTCAAGCTCATCCTTTCTTAGGAGATCCAAGCCGAGTCTTGTTGCTCACTTGCCATG GTTCTATGGCCAGCTCAGAGCAGAGGTTAATATTTGATGAGCCTGAAGAGGGTGTGCGGAAAATAGCACTGGCTACTAATATTGCTGAGACAAGTATCAC TATCAATGATATTGTTTTCGTTCTTGACTGTGGGAAAGCAAAGGAGTCTTCCTATGATGCATTGAATAACACTCCTTGTCTGCTTCCTTCCTGGATTTCT AAGGTTTCTGCTCAACAAAGAAGAGGAAGAGCTGGCCGCGTTCAACCAGGAGAATGTTATCACCTCTATCCTAGGTGTGTATATGATGCTTTTGCAGAGT ACCAATTGCCAGAAATTTTGAGAACGCCTTTGCAGTCTATTTGTCTACAAATCAAAAGTCTGAAACTTGGAAGCATATCTGACTTTCTATCTAGGGCTTT GCAGTCGCCTGAGTTATTAGCGGTTCAAAATGCCATTGAATATTTAAAAATCATCGGAGCCTTGGATCAGAATGAAAACTTGACTGTTCTAGGTCGATAT TTGACTATGCTTCCAGTGGAGCCTAAGCTTGGAAAAATGCTCGTTTTAGGTGCTATTTTGAATTGCCTGGATCCAGTACTAACTGTTGTTGCAGGTCTTA GTGTCAGAGATCCTTTCTTGATGCCATTGGACAAGAAGGATCTTGCAGAGGCTGCAAAATCTCAGTTTTCCGGTGATTATAGTGACCACCTAGCACTTGT CCGAGCCTATGAGGGCTGGAAAGATGCTGAAAGAGATCTTTCTGGATATGAGTACTGCTGGAAAAATTTTCTCTCAGTGCAATCTATGAAAGCTATTGAT TCTCTTCGGAAGGAGTTCTTCTCCTTGCTCATGGATACCGGCCTTGTCGATGGCAACCCAACCACCTGCAATGCATGGAGCCACGATGAGCATCTGGTTC GAGCAGTTATTTGCAGTGGCCTCTATCCTGGAATTTGCTCCATTGTGCACAATGAGAAGTCATTTTCACTAAAAACCATGGAGGATGGCCAGGTGCTTCT GCACTCTAACTCGGTTAATGCTCGAGAATCAAAAATCCCCTATCCATGGCTGGTTTTCAATGAGAAGATAAAAGTTAATAGTGTTTTTCTCCGGGATTCA ACTGCTGTTTCTGATTCAGTGCTGCTTCTATTTGGCGGGAGCATATCTAGAGGGGATGCTGATGGGCACTTGAAAATGTTGGGAGGATTTCTGGAATTCT ACATGCAACCTTCTGTAGCAGAAATGTATCAGAGCTTGAGGAGAGAGCTCGATGAGCTGATTCAGACCAAACTGCTGAATCCCAGGATGGACATACACAT GCACCATGAGCTTCTCTCTGCAGTGCGTTTGTTAGTTTCAGAGGATAATTGTGATGGCAGATTTGTGTTCGGTTGCCATTTCTTCAAGTCCTCAAAACCA GCTGTTTTTGCTACACAGCCAACCTTAATTTCAAGGGGTGATAGTGGACCTGGAGGTGATAATTCCAAGAGTCAGCTCCAGACATTGCTCACCCGGGCAG GATATGCTGCACCATCGTACAAGACAAAGCAATTGAAGAACAACCAATTTCGCGCCACTGTTGAGTTCAATGGAATGCAAATTATGGGACAGCCTTGCAA CAACAAGAAGAGTGCAGAAAAAGATGCAGCGGCTGAAGCCCTGCAGTGGCTGGTGGGTGGGACCCAAACAAGCCAGGAATACATTAATCACATGTCAATG TTGCTAAAGAAGAGCAAAAAGGATCATTACTAA
AA sequence Show only first row Show all	>Potri.010G117800.2 pacid=42798094 polypeptide=Potri.010G117800.2.p locus=Potri.010G117800 ID=Potri.010G117800.2.v4.1 annot-version=v4.1 MLSSLLHSPPWQIPQTVKPSTSVSSTAMKDRSPPSSLGAVYVPPHCRIRSLVSTPYCHSSSNASSPYPPIGSKFRENHSESTTVLNPRNRPPLHQQQRNG VADNNDFNSNKKPAPKFVSAYDDRESEEGSDLETDSPVVQPGAYLSDDIEEWKRKLTMLLHDKEKQELISREKKDRRDFEQIAALASKMGLHSHSYAKVV VFSKAPLPNYRFDLDDKRPQREVNLPLGLLQRVDAYLGDYLYQRSRINSNFPDTFSRSSSSSLSTDDGLFEQPEPLASSKAVTEKILWRRSMQLCDQQQA WQESPEGCKMLEFRKTLPAYKEKDAILAAISQNQIVIISGATGCGKTTQIPQFILESEVESVRGAVCNIICTQPRRISAMSVSERIASERGEKLGERVGY KVRLEGVKGKDTHLLFCTTGILLRRLLVDRSLKGITHVIVDEIHERGMNEDFLLIVLKDLLPHRPELKLILMSATLDAELFSSYFDGAPILRIPGFTFPV RTHFLENILEMTGYRLTQCNQIDGYGQEKMWRIGKQAPRKRKSQIASSVEDALRTADFKEYSSQTRESLSCWNPDSIGFNLVEYLLCNICENERPGAVLV FMTGWDDISSLKDKLQAHPFLGDPSRVLLLTCHGSMASSEQRLIFDEPEEGVRKIALATNIAETSITINDIVFVLDCGKAKESSYDALNNTPCLLPSWIS KVSAQQRRGRAGRVQPGECYHLYPRCVYDAFAEYQLPEILRTPLQSICLQIKSLKLGSISDFLSRALQSPELLAVQNAIEYLKIIGALDQNENLTVLGRY LTMLPVEPKLGKMLVLGAILNCLDPVLTVVAGLSVRDPFLMPLDKKDLAEAAKSQFSGDYSDHLALVRAYEGWKDAERDLSGYEYCWKNFLSVQSMKAID SLRKEFFSLLMDTGLVDGNPTTCNAWSHDEHLVRAVICSGLYPGICSIVHNEKSFSLKTMEDGQVLLHSNSVNARESKIPYPWLVFNEKIKVNSVFLRDS TAVSDSVLLLFGGSISRGDADGHLKMLGGFLEFYMQPSVAEMYQSLRRELDELIQTKLLNPRMDIHMHHELLSAVRLLVSEDNCDGRFVFGCHFFKSSKP AVFATQPTLISRGDSGPGGDNSKSQLQTLLTRAGYAAPSYKTKQLKNNQFRATVEFNGMQIMGQPCNNKKSAEKDAAAEALQWLVGGTQTSQEYINHMSM LLKKSKKDHY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01130			DEA(D/H)-box RNA helicase fami...		Potri.010G117800 [exp]	0	1
AT3G62900			CW-type Zinc Finger (.1)		Potri.005G028700 [exp]	2.82	0.8930
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Potri.003G106200 [exp]	3.60	0.8566
AT3G08800		SIEL	SHORT-ROOT interacting embryon...		Potri.016G127500 [exp]	3.74	0.8784
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Potri.013G006000 [exp]	3.87	0.8931	MOM.2,1
AT5G55840			Pentatricopeptide repeat (PPR)...		Potri.001G368700 [exp]	4.24	0.8829
AT2G01460			P-loop containing nucleoside t...		Potri.008G130200 [exp]	4.47	0.8639
AT1G77310			unknown protein		Potri.005G067800 [exp]	6.92	0.8194
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Potri.008G081200 [exp]	7.34	0.8661
AT4G27220			NB-ARC domain-containing disea...		Potri.011G127300 [exp]	7.54	0.8485
AT2G24350			RNA binding (RRM/RBD/RNP motif...		Potri.012G145100 [exp]	10.95	0.8712

Compare expression of checked genes

Potri.010G117800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.