Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01140 698 / 0 PDE345 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) AT4G38970 620 / 0 FBA2 fructose-bisphosphate aldolase 2 (.1.2) AT2G21330 605 / 0 FBA1 fructose-bisphosphate aldolase 1 (.1.2.3) AT4G26530 391 / 3e-135 Aldolase superfamily protein (.1.2) AT2G36460 383 / 4e-132 Aldolase superfamily protein (.1.2) AT3G52930 375 / 3e-129 Aldolase superfamily protein (.1) AT4G26520 375 / 5e-129 Aldolase superfamily protein (.1) AT5G03690 374 / 1e-128 Aldolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G125900 [exp] 779 / 0 AT2G01140 700 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Potri.009G124100 [exp] 626 / 0 AT4G38970 703 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.007G015500 [exp] 624 / 0 AT4G38970 703 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.004G162400 [exp] 619 / 0 AT4G38970 704 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.001G468100 [exp] 400 / 1e-138 AT4G26530 629 / 0.0 Aldolase superfamily protein (.1.2) Potri.011G165000 [exp] 394 / 2e-136 AT4G26530 628 / 0.0 Aldolase superfamily protein (.1.2) Potri.018G090100 [exp] 389 / 2e-134 AT3G52930 620 / 0.0 Aldolase superfamily protein (.1) Potri.006G165700 [exp] 382 / 6e-132 AT2G36460 634 / 0.0 Aldolase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031088 [exp] 614 / 0 AT4G38970 674 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Lus10035473 [exp] 612 / 0 AT4G38970 671 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Lus10007940 [exp] 519 / 0 AT2G01140 507 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10013477 [exp] 499 / 5e-176 AT2G01140 481 / 1e-168 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10034619 [exp] 476 / 4e-166 AT2G01140 457 / 1e-158 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10035247 [exp] 414 / 6e-145 AT2G01140 466 / 3e-165 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10032956 [exp] 402 / 1e-139 AT4G26530 635 / 0.0 Aldolase superfamily protein (.1.2) Lus10014373 [exp] 394 / 2e-136 AT2G36460 629 / 0.0 Aldolase superfamily protein (.1.2) Lus10023870 [exp] 392 / 1e-135 AT2G36460 630 / 0.0 Aldolase superfamily protein (.1.2) Lus10027717 [exp] 377 / 1e-129 AT3G52930 622 / 0.0 Aldolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [poplar] [flax] Peptidase_MH PF00274 [poplar] [flax] Glycolytic Fructose-bisphosphate aldolase class-I
Representative CDS sequence Show only first row Show all	>Potri.010G117900.1 pacid=42797302 polypeptide=Potri.010G117900.1.p locus=Potri.010G117900 ID=Potri.010G117900.1.v4.1 annot-version=v4.1 ATGGCCTGTGCAAACCTTGTAAAGCTAAACGCAGCGTCGTCTTCATGGATCGGCCAAAAGTCACCTTTCGGCCAGCGATCTCAGGGATCCTCAACTCGCC GAGTCTCCTTTTCGATCCGTGCCAACTCTTACACTGACGAGCTCGTCCAAACCGCTAAAACTATTGCATCACCTGGTCGTGGTATCCTTGCCATAGACGA ATCAAATGCAACCTGTGGGAAGAGGTTGGCATCTATTGGCTTGGATAACACCGAAACCAACCGACAAGCATACAGACAACTTTTATTGACTACTCCTGGT CTTGGCGAATACATTTCTGGTGCCATTCTTTTCGAGGAGACACTTTACCAGTCTACAACTGATGGAAAGAAGTTCGTGGATTGCCTGCGTGATGAGAACA TTGTACCTGGCATCAAAGTTGACAAGGGTTTAGTCCCCCTACCAGGTTCAAACAACGAGTCTTGGTGCCAAGGTTTGGATGGATTGGCTTCAAGATCTGC TGAATATTACAAGCAAGGTGCACGTTTTGCTAAGTGGAGGACTGTTGTCAGCATTCCCTGTGGCCCTTCTGCTCTGGCTGTCAAGGAAGCTGCATGGGGG CTTGCACGATATGCTGCCATTTCTCAGGATAACGGTCTTGTGCCCATAGTTGAGCCTGAGATTCTACTTGATGGGGACCATCCAATTGACAGGACCCTTG AAGTTGCTGAGAAGGTCTGGTCAGAAGTCTTTTACTATTTGGCTGAAAACAATGTTGTGTTTGAGGGCATCCTACTTAAGCCTAGCATGGTAACGCCAGG GGCTGAACACAAGGAGAAGGCATCAGCAGATACCATAGCCAAATATACACTTACGATGCTTAAAAGGAGAGTACCTCCTGCAGTTCCTGGTATCATGTTT TTGTCTGGAGGGCAATCTGAAGTGCAAGCAACCCTCAACCTCAATGCAATGAACCAAAGCCCCAACCCATGGCATGTTTCCTTCTCATATGCACGTGCAC TGCAGAACACCGTGCTCAAGACATGGCAAGGACGCCCTGATAAGGTGGAAGCTGCTCAGAAGTCACTTTTGGTGCGTGCCAAGGCTAACTCCTTGGCTCA GCTTGGAAGGTATTCTGCCGAGGGTGAAAGCGAGGAAGCTACGAAGGGAATGTTCGTAAAGGGCTATACCTATTGA
AA sequence Show only first row Show all	>Potri.010G117900.1 pacid=42797302 polypeptide=Potri.010G117900.1.p locus=Potri.010G117900 ID=Potri.010G117900.1.v4.1 annot-version=v4.1 MACANLVKLNAASSSWIGQKSPFGQRSQGSSTRRVSFSIRANSYTDELVQTAKTIASPGRGILAIDESNATCGKRLASIGLDNTETNRQAYRQLLLTTPG LGEYISGAILFEETLYQSTTDGKKFVDCLRDENIVPGIKVDKGLVPLPGSNNESWCQGLDGLASRSAEYYKQGARFAKWRTVVSIPCGPSALAVKEAAWG LARYAAISQDNGLVPIVEPEILLDGDHPIDRTLEVAEKVWSEVFYYLAENNVVFEGILLKPSMVTPGAEHKEKASADTIAKYTLTMLKRRVPPAVPGIMF LSGGQSEVQATLNLNAMNQSPNPWHVSFSYARALQNTVLKTWQGRPDKVEAAQKSLLVRAKANSLAQLGRYSAEGESEEATKGMFVKGYTY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Potri.010G117900 [exp]	0	1
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.007G088426 [exp]	3.87	0.7644
AT5G38410			Ribulose bisphosphate carboxyl...		Potri.018G091401 [exp]	4.89	0.6904
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Potri.005G033800 [exp]	5.74	0.6157
AT2G43230			Protein kinase superfamily pro...		Potri.007G124000 [exp]	7.07	0.6750
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Potri.004G167500 [exp]	17.66	0.6826
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Potri.002G216400 [exp]	20.85	0.6410
AT3G54250			GHMP kinase family protein (.1...		Potri.010G237900 [exp]	22.84	0.6656	MVD1.2
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Potri.007G123300 [exp]	26.73	0.6446
AT4G33070			Thiamine pyrophosphate depende...		Potri.004G054100 [exp]	26.98	0.6199	PDC1.3
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.019G014382 [exp]	34.87	0.6669

Compare expression of checked genes

Potri.010G117900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.