Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22950 41 / 3e-05 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G18210 39 / 0.0002 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G125800 [exp] 45 / 8e-07 AT3G18210 452 / 3e-159 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.015G043100 [exp] 41 / 4e-05 AT3G18210 554 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.012G051200 [exp] 38 / 0.0004 AT3G18210 531 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035445 [exp] 44 / 5e-06 AT3G21090 667 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10031064 [exp] 42 / 2e-05 AT3G18210 433 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10000171 [exp] 41 / 2e-05 AT1G22950 171 / 3e-52 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G117951.1 pacid=42799505 polypeptide=Potri.010G117951.1.p locus=Potri.010G117951 ID=Potri.010G117951.1.v4.1 annot-version=v4.1 ATGGTTCTGTGGTTGAATACGGAGAGCATATGGATATCGAGCTTGGATGAGCAATTCTTCGTCATGGTCGCCATTGGGCATGGTGCAAGAGCTACTATTT CTGGGCACCAGGTCAACTTAGTTATATGGTGCAGAAGATATTCAATTAGGCTTTTAAGCAGAACTACAATCAATGACCATGGCCTAGCTGTCAATGTACA AATATCTAGAAACTTAAAGACTTTGGCATATGGTGCTAATCCCCATCTAATTCTTCATTCTGTACCACGGTCCAAGCTGTGCTTCAAATAG
AA sequence Show only first row Show all	>Potri.010G117951.1 pacid=42799505 polypeptide=Potri.010G117951.1.p locus=Potri.010G117951 ID=Potri.010G117951.1.v4.1 annot-version=v4.1 MVLWLNTESIWISSLDEQFFVMVAIGHGARATISGHQVNLVIWCRRYSIRLLSRTTINDHGLAVNVQISRNLKTLAYGANPHLILHSVPRSKLCFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22950			2-oxoglutarate (2OG) and Fe(II...		Potri.010G117951 [exp]	0	1
AT4G31980			unknown protein		Potri.006G251500 [exp]	23.93	0.7111
					Potri.017G113101 [exp]	29.39	0.6620
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.007G010500 [exp]	46.43	0.6733
AT4G27220			NB-ARC domain-containing disea...		Potri.011G127300 [exp]	49.71	0.6838
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.017G106500 [exp]	51.16	0.6795
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Potri.008G026900 [exp]	52.54	0.6882
AT4G32440			Plant Tudor-like RNA-binding p...		Potri.001G173900 [exp]	106.00	0.6466
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Potri.009G004100 [exp]	113.36	0.6463
AT5G45290			RING/U-box superfamily protein...		Potri.006G190500 [exp]	132.34	0.6181
AT2G24350			RNA binding (RRM/RBD/RNP motif...		Potri.012G145050 [exp]	136.13	0.6293

Compare expression of checked genes

Potri.010G117951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.