Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15100 142 / 6e-44 RHA2A RING-H2 finger A2A (.1) AT2G01150 127 / 7e-38 RHA2B RING-H2 finger protein 2B (.1) AT3G61460 72 / 5e-16 BRH1 brassinosteroid-responsive RING-H2 (.1) AT2G04240 59 / 4e-11 XERICO RING/U-box superfamily protein (.1.2) AT5G41400 57 / 2e-10 RING/U-box superfamily protein (.1) AT1G80400 57 / 5e-10 RING/U-box superfamily protein (.1) AT4G30370 56 / 5e-10 RING/U-box superfamily protein (.1) AT3G60220 54 / 4e-09 ATL4 TOXICOS EN LEVADURA 4 (.1) AT5G45290 54 / 6e-09 RING/U-box superfamily protein (.1.2) AT2G35000 54 / 7e-09 ATL9 Arabidopsis toxicos en levadura 9, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G125700 [exp] 303 / 4e-107 AT2G01150 125 / 5e-37 RING-H2 finger protein 2B (.1) Potri.007G086300 [exp] 65 / 2e-13 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1) Potri.014G170400 [exp] 62 / 2e-12 AT2G04240 181 / 3e-59 RING/U-box superfamily protein (.1.2) Potri.014G087700 [exp] 61 / 4e-12 AT3G61460 220 / 2e-74 brassinosteroid-responsive RING-H2 (.1) Potri.002G161900 [exp] 61 / 8e-12 AT3G61460 234 / 7e-80 brassinosteroid-responsive RING-H2 (.1) Potri.005G081300 [exp] 61 / 8e-12 AT2G01150 75 / 1e-17 RING-H2 finger protein 2B (.1) Potri.005G081200 [exp] 60 / 1e-11 AT1G15100 74 / 3e-17 RING-H2 finger A2A (.1) Potri.001G101000 [exp] 59 / 2e-11 AT3G61460 171 / 9e-55 brassinosteroid-responsive RING-H2 (.1) Potri.006G217000 [exp] 58 / 5e-11 AT5G20885 138 / 8e-42 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007936 [exp] 87 / 3e-22 AT2G01150 104 / 3e-29 RING-H2 finger protein 2B (.1) Lus10013475 [exp] 87 / 5e-22 AT2G01150 104 / 2e-29 RING-H2 finger protein 2B (.1) Lus10007937 [exp] 72 / 4e-16 AT1G15100 100 / 2e-27 RING-H2 finger A2A (.1) Lus10036378 [exp] 58 / 1e-10 AT3G61460 210 / 5e-70 brassinosteroid-responsive RING-H2 (.1) Lus10019150 [exp] 55 / 5e-10 AT2G04240 62 / 6e-13 RING/U-box superfamily protein (.1.2) Lus10021197 [exp] 57 / 6e-10 AT1G04360 268 / 2e-87 RING/U-box superfamily protein (.1) Lus10043353 [exp] 54 / 3e-09 AT5G20885 157 / 4e-49 RING/U-box superfamily protein (.1) Lus10017510 [exp] 54 / 4e-09 AT3G61460 176 / 6e-57 brassinosteroid-responsive RING-H2 (.1) Lus10027736 [exp] 53 / 4e-09 AT4G17905 89 / 8e-22 RING/U-box superfamily protein (.1) Lus10019507 [exp] 53 / 6e-09 AT5G20885 162 / 5e-51 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.010G118000.1 pacid=42798402 polypeptide=Potri.010G118000.1.p locus=Potri.010G118000 ID=Potri.010G118000.1.v4.1 annot-version=v4.1 ATGGGTTTACAAAACCAGCTGAACGACGTTTCTTCTGAATCGATCCCGTTGCTCCTCATAGCACTCATAGCCAACTGTGTTGCCTGCCTTCGCTCTTTCC TTTTCAGCGTTTTCCACTCCGTGGGCCTTCACCGATTAGACCAGGCCCACGTTATGGATGATGGGCTGTTGGGTTCGATCGGCTCTGGCTTCGCCGGCCT CATCGTGCTCGCCGAGCAGCGTAAACTCAACCGGGTTTTTTCTTACAAGTATTGTTGCGGTGGTGACAGTAATACAAATGATAAGGGAGGATCGGATTGT GTGGTGTGCTTGTGCACACTAAGACATGGGGACCAGGTGAGGAGGCTTGATTGCTGCCATGTTTTTCACAAGGAGTGCTTTGATGGATGGCTTGATCATC TCAATTTTAATTGCCCCCTTTGTCGGTGGCCGCTTGTGTCCGATGAGCGCGTGGAAGAAACGCGAAGGCGCGTGGGAGCGGATGTAGTGGATTGGCTCTC CTTGAGATGA
AA sequence Show only first row Show all	>Potri.010G118000.1 pacid=42798402 polypeptide=Potri.010G118000.1.p locus=Potri.010G118000 ID=Potri.010G118000.1.v4.1 annot-version=v4.1 MGLQNQLNDVSSESIPLLLIALIANCVACLRSFLFSVFHSVGLHRLDQAHVMDDGLLGSIGSGFAGLIVLAEQRKLNRVFSYKYCCGGDSNTNDKGGSDC VVCLCTLRHGDQVRRLDCCHVFHKECFDGWLDHLNFNCPLCRWPLVSDERVEETRRRVGADVVDWLSLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15100		RHA2A	RING-H2 finger A2A (.1)		Potri.010G118000 [exp]	0	1
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Potri.013G014400 [exp]	1.73	0.7774
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Potri.004G099100 [exp]	2.82	0.7162	DIN9.2
AT1G67570			Protein of unknown function (D...		Potri.015G092200 [exp]	7.07	0.5981
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.010G234100 [exp]	8.71	0.7598	MANS.2
AT1G06930			unknown protein		Potri.013G156100 [exp]	11.22	0.6797
AT2G17760			Eukaryotic aspartyl protease f...		Potri.005G108700 [exp]	13.07	0.7294
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Potri.002G132900 [exp]	19.36	0.7158
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Potri.001G073900 [exp]	20.39	0.5881
AT5G15790			RING/U-box superfamily protein...		Potri.004G114800 [exp]	22.29	0.6548
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Potri.003G167900 [exp]	22.71	0.6448

Compare expression of checked genes

Potri.010G118000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.