Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66920 317 / 8e-100 Protein kinase superfamily protein (.1.2) AT5G38260 304 / 7e-95 Protein kinase superfamily protein (.1) AT1G66930 304 / 3e-94 Protein kinase superfamily protein (.1) AT1G66910 301 / 2e-93 Protein kinase superfamily protein (.1) AT5G38280 301 / 3e-93 PR5K PR5-like receptor kinase (.1) AT1G67000 295 / 3e-89 Protein kinase superfamily protein (.1) AT1G66980 296 / 3e-88 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT1G70250 288 / 4e-87 receptor serine/threonine kinase, putative (.1) AT5G39020 285 / 9e-86 Malectin/receptor-like protein kinase family protein (.1) AT4G18250 285 / 1e-85 receptor serine/threonine kinase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G125500 [exp] 999 / 0 AT1G67000 309 / 3e-94 Protein kinase superfamily protein (.1) Potri.015G018600 [exp] 458 / 4e-154 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.017G009400 [exp] 419 / 1e-138 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.017G007900 [exp] 410 / 3e-135 AT5G38260 324 / 1e-101 Protein kinase superfamily protein (.1) Potri.017G009100 [exp] 400 / 3e-131 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.017G008800 [exp] 400 / 6e-131 AT5G38280 330 / 1e-103 PR5-like receptor kinase (.1) Potri.007G125450 [exp] 386 / 5e-126 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.007G125800 [exp] 386 / 6e-126 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.007G125000 [exp] 379 / 2e-123 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007934 [exp] 489 / 1e-166 AT5G38260 273 / 3e-83 Protein kinase superfamily protein (.1) Lus10014924 [exp] 384 / 2e-125 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10025492 [exp] 384 / 4e-125 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10022359 [exp] 370 / 1e-120 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008362 [exp] 327 / 1e-104 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10014923 [exp] 327 / 5e-104 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10025545 [exp] 315 / 8e-103 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10008335 [exp] 318 / 5e-99 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10025553 [exp] 308 / 4e-96 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10025547 [exp] 298 / 7e-93 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.010G118300.1 pacid=42799203 polypeptide=Potri.010G118300.1.p locus=Potri.010G118300 ID=Potri.010G118300.1.v4.1 annot-version=v4.1 ATGATCAGAAGGCAAGAATCACCGGTACCCTCAACTACCCTGTTTTCTGTGCTAATCTTTATACTCTCAACTGAAGTTGAAGCAAGATTCATCCCACATG GTTGCTCCCGTTCTTCATGTGGAGACATCGAAATCATCGACTACCCCTTTCGCCTAAAGACCGATCCACCTGGCTGTGGTGAAACAGTTTTTCAACTTTC TTGCGAGAACAACAAGACCATATTAGAATTCCACTCAGGGAAGTATTATGTTAAGCAAATTTCCTACGATGATAATAGACTCCGCGTTGTTGATTTTAAC TTAGCTAGTGGTAGCTGCAGCCTTCCTTACAAATCAGTGTCGGTTGATGAGGTTAGAGATGATCATCACTATAGATTAGTCTCTAACACTTATACAAGTT TTATCAAGTGTTCAAATAATTTGAGTGATCAAGCTTATAGACTACTTCCTTGTTTGAGTGGAAACGGGTCTAGTTTTTATGTTAGTTATGATAACTACAT AATTTCTAATCTCCAAGGACCTTGCTCGTTCATTTCAAGAGTTCCTACAGTTTATCAGACTGTCTTGTTTCCTTCCTTCGACAGTATCTTGCAATTGATG CAAACAGGGTTTGATCTTGAATGGTCTATTGAGTGCTGGGATTCATCATTTAGCTATGATTGTTACAAATCAGGTAATTATCATCCCCCTTGGTTTGCAG CTTTCTCGATGACTTGGAATGTTTTGTCAGCAATATATTTAGTTGGAAGATTCATCATCGCTCCGATAGGTATATTTGGATTCCTTATCCACAAGTATAT GACAACAAAGAAGGCGATTGACAACGAGCAGAGATTTCTGCGCCGTCAGCAACACTCGATGCCAAGGAGGTACTCTTACTCTGACATTATTGCAATTACA AACAACTTCGAAAATAAATTAGGCCAAGGTGGATTTGGGACTGTATATAAAGGACAACTTCGTGATGGGTTTTCAGTTGCTGTTAAAATGCTTGACAATC CCAAATGCAACGATGAAGACTTCATTAATGAAGTCTCCATAATTGGTAGAATTCATCAAGTCAATATAGTATGGCTGATGGGATTTTGTTCTGAGGGGTG TCACCGAGCTCTAGTCTTTGAATACATGGCTAATGGATCTCTTGATAAGCTTTTATTTTCGAGAGAAGCCGAACGTCATCTAGTTGGCTGGGAGAAACTC CTTCAAATAGCCTTAGGGACAGCTAGAGGGATTGAGCATCTTCATGGGGGATGCAATGTATGTATTCTTCATTCAGATATTAAGCCTCAGAATGTCCTGC TAGATAATAATTTCATCCCAAAAGTTTCAGATTTTGGCCTCTCAAAATTTTATCCCGAGGAAAAGGATTTTGTGTCCATTAGTACTACCAGAGGAACTAT AGGGTACATTGCTCCTGAAATGATTTCGAGGAACCTTGGAGCTGTTTCTTGCAAATCAGATGTTTATAGTTTTGGGATGTTATTATTGGAAATGGCTGGA AGAAGGAACTCTAATTCAAAGGGAAATTGTTCAAGTGAACTATATTTCCTGTCATGGGTTTATGACCATCTGATTGAGAGGGCAGATTTACAGCTTGAAA ATGTTACTGAAATTGAGGCTGCTATACCAAGAAAGCTTTGTTTGGTTGGGTTGTGGTGCATCCAAAAGGCAGCATCAGATCGTCCATCAATGACCAAAGT TGTGGAAATGCTTGAAGCCAATGTCGATGATCTGCAATTACCTCCCAATGCCTTATCATTTCCTCAATCTATTTCCAAAGAACCTCAATCAGATTCTTCA ACAGAATTGCTAATATCTGACACAGTGGAACAAAGCTTGTAG
AA sequence Show only first row Show all	>Potri.010G118300.1 pacid=42799203 polypeptide=Potri.010G118300.1.p locus=Potri.010G118300 ID=Potri.010G118300.1.v4.1 annot-version=v4.1 MIRRQESPVPSTTLFSVLIFILSTEVEARFIPHGCSRSSCGDIEIIDYPFRLKTDPPGCGETVFQLSCENNKTILEFHSGKYYVKQISYDDNRLRVVDFN LASGSCSLPYKSVSVDEVRDDHHYRLVSNTYTSFIKCSNNLSDQAYRLLPCLSGNGSSFYVSYDNYIISNLQGPCSFISRVPTVYQTVLFPSFDSILQLM QTGFDLEWSIECWDSSFSYDCYKSGNYHPPWFAAFSMTWNVLSAIYLVGRFIIAPIGIFGFLIHKYMTTKKAIDNEQRFLRRQQHSMPRRYSYSDIIAIT NNFENKLGQGGFGTVYKGQLRDGFSVAVKMLDNPKCNDEDFINEVSIIGRIHQVNIVWLMGFCSEGCHRALVFEYMANGSLDKLLFSREAERHLVGWEKL LQIALGTARGIEHLHGGCNVCILHSDIKPQNVLLDNNFIPKVSDFGLSKFYPEEKDFVSISTTRGTIGYIAPEMISRNLGAVSCKSDVYSFGMLLLEMAG RRNSNSKGNCSSELYFLSWVYDHLIERADLQLENVTEIEAAIPRKLCLVGLWCIQKAASDRPSMTKVVEMLEANVDDLQLPPNALSFPQSISKEPQSDSS TELLISDTVEQSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66920			Protein kinase superfamily pro...		Potri.010G118300 [exp]	0	1
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Potri.003G223200 [exp]	2.23	0.7569
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Potri.002G073500 [exp]	4.00	0.7865
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.004G059200 [exp]	6.00	0.7460
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.005G053500 [exp]	6.48	0.7805
AT2G20030			RING/U-box superfamily protein...		Potri.002G153400 [exp]	8.12	0.7529
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.004G203400 [exp]	8.30	0.7730
AT2G17020			F-box/RNI-like superfamily pro...		Potri.009G139500 [exp]	8.66	0.7101
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Potri.003G109400 [exp]	13.03	0.7421
AT2G16250			Leucine-rich repeat protein ki...		Potri.004G155100 [exp]	13.26	0.6317
AT2G32800		AP4.3A	protein kinase family protein ...		Potri.017G055000 [exp]	13.71	0.7622

Compare expression of checked genes

Potri.010G118300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.