Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68200 242 / 2e-79 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT1G66810 184 / 8e-57 C3HZnF AtC3H14 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G35430 51 / 2e-07 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G32360 46 / 2e-05 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT3G19360 42 / 0.0002 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT2G32930 42 / 0.0003 C3HZnF ZFN2 zinc finger nuclease 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G095100 [exp] 213 / 1e-67 AT1G66810 215 / 7e-68 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.017G119900 [exp] 211 / 5e-67 AT1G66810 221 / 3e-70 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.003G061600 [exp] 53 / 5e-08 AT3G19360 109 / 1e-27 Zinc finger (CCCH-type) family protein (.1) Potri.004G169500 [exp] 49 / 1e-06 AT3G19360 284 / 1e-93 Zinc finger (CCCH-type) family protein (.1) Potri.009G130600 [exp] 49 / 2e-06 AT3G19360 276 / 9e-91 Zinc finger (CCCH-type) family protein (.1) Potri.001G140800 [exp] 49 / 2e-06 AT1G32360 355 / 3e-121 Zinc finger (CCCH-type) family protein (.1) Potri.003G093600 [exp] 49 / 2e-06 AT1G32360 353 / 2e-120 Zinc finger (CCCH-type) family protein (.1) Potri.005G176900 [exp] 45 / 3e-05 AT1G66810 48 / 4e-06 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.009G125500 [exp] 45 / 4e-05 AT4G38890 886 / 0.0 FMN-linked oxidoreductases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035256 [exp] 270 / 3e-90 AT1G68200 248 / 6e-81 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10034624 [exp] 269 / 8e-90 AT1G68200 251 / 5e-82 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10019431 [exp] 50 / 8e-07 AT3G19360 266 / 2e-87 Zinc finger (CCCH-type) family protein (.1) Lus10043287 [exp] 45 / 3e-05 AT3G19360 290 / 7e-96 Zinc finger (CCCH-type) family protein (.1) Lus10004573 [exp] 45 / 3e-05 AT1G32360 342 / 1e-116 Zinc finger (CCCH-type) family protein (.1) Lus10000486 [exp] 45 / 3e-05 AT1G32360 337 / 6e-115 Zinc finger (CCCH-type) family protein (.1) Lus10035460 [exp] 43 / 0.0003 AT4G38890 870 / 0.0 FMN-linked oxidoreductases superfamily protein (.1) Lus10037411 [exp] 42 / 0.0005 AT2G28450 874 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10017708 [exp] 41 / 0.0008 AT1G03790 252 / 7e-82 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10043330 [exp] 41 / 0.0008 AT5G63260 357 / 3e-119 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Potri.010G118700.2 pacid=42797486 polypeptide=Potri.010G118700.2.p locus=Potri.010G118700 ID=Potri.010G118700.2.v4.1 annot-version=v4.1 ATGCGACACCAGGACCTAATAAACCGAAGCGCACTCTGCCTCGCGCGCCTCCGTGAAGTAACCGTCGAAATGGAGTGTCTCCGCCAAGACAACGCCGATC TTCGATCTATCAATCGCGAGCTCAACAATCAACTCAGCGTCCTTATCCAAGCCTCACTCCACAAACACTACAACGACTCTACAAGGACGCCGTTTGACAT TGATATTGGTTTCCACAATTTGTGCAACATCAGCAGCGGAGGAGGTGGAGGTCATGACATGTGCGAAGAGGATGAAAGTCCGACGAGCGTCATGGAGGCA GGGGGCGATGACCGGGAGAGGATTTCGCTGCCTAAGAGTATTTCAGTGAGGTCTAATAGCTACTCGAAGAGGAACCAGGAGCAGGCGGCTAGTGCTAGCG TGACTAGGGCCATCACTCGGCTGAGAACACCGAGTCCACTCAATACCGCGAAGGTTTATGTGCGTAGAGGCAAGAAACAGGAGGAGCCACTTGAGCTGGA AGTGTATAACCAAGGCATGTTCAAAACAGAGTTGTGCAACAAATGGCAGGAGACAGGGGCTTGCCTATACGGCAACCATTGTCAGTTTGCTCATGGAATT GAGGAGCTCCGCCCAGTCATCCGTCACCCTCGCTACAAGACTGAGGTCTGCAAAATGGTCCTTGCTGGTGGTATCTGTCCTTATGGCCATCGCTGTCACT TCCGCCATGCCCTCACGGAGCAGGACAGGTTCCTTAGCCACATCAAGCCAGGGAAATCAAGCCTGACAGGGAGGATATCAGGTTTGACTAGGGTCCTATG CTGGAAGGGGATTGGCGAGTATAACCTGAATTAG
AA sequence Show only first row Show all	>Potri.010G118700.2 pacid=42797486 polypeptide=Potri.010G118700.2.p locus=Potri.010G118700 ID=Potri.010G118700.2.v4.1 annot-version=v4.1 MRHQDLINRSALCLARLREVTVEMECLRQDNADLRSINRELNNQLSVLIQASLHKHYNDSTRTPFDIDIGFHNLCNISSGGGGGHDMCEEDESPTSVMEA GGDDRERISLPKSISVRSNSYSKRNQEQAASASVTRAITRLRTPSPLNTAKVYVRRGKKQEEPLELEVYNQGMFKTELCNKWQETGACLYGNHCQFAHGI EELRPVIRHPRYKTEVCKMVLAGGICPYGHRCHFRHALTEQDRFLSHIKPGKSSLTGRISGLTRVLCWKGIGEYNLN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68200	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.010G118700 [exp]	0	1
AT5G37310			Endomembrane protein 70 protei...		Potri.004G075450 [exp]	6.24	0.9401
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.015G129400 [exp]	6.32	0.9361	Pt-FLA14.7
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Potri.003G074600 [exp]	10.48	0.9202	QRT3.2
AT1G12000			Phosphofructokinase family pro...		Potri.011G015600 [exp]	14.17	0.9358
AT2G28315			Nucleotide/sugar transporter f...		Potri.004G211900 [exp]	15.49	0.9276
AT1G63300			Myosin heavy chain-related pro...		Potri.001G106700 [exp]	16.12	0.8913
AT2G45040			Matrixin family protein (.1)		Potri.014G058200 [exp]	16.43	0.9163
AT1G52780			Protein of unknown function (D...		Potri.001G175600 [exp]	17.43	0.9137
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Potri.006G131000 [exp]	17.74	0.9251
AT2G38580			Mitochondrial ATP synthase D c...		Potri.016G139000 [exp]	17.88	0.9007

Compare expression of checked genes

Potri.010G118700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.