Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68185 164 / 5e-51 Ubiquitin-like superfamily protein (.1) AT5G55856 59 / 1e-11 Ubiquitin-like superfamily protein (.1) AT4G26840 49 / 1e-07 ATSUMO1, SUMO1, SUM1 ARABIDOPSIS THALIANA SMALL UBIQUITIN-LIKE MODIFIER 1, small ubiquitin-like modifier 1 (.1) AT5G55160 45 / 3e-06 ATSUMO2, SUMO2, SUM2 small ubiquitin-like modifier 2 (.1.2) AT5G55170 45 / 4e-06 ATSUMO3, SUMO3, SUM3 small ubiquitin-like modifier 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G224700 [exp] 51 / 1e-08 AT4G26840 170 / 1e-56 ARABIDOPSIS THALIANA SMALL UBIQUITIN-LIKE MODIFIER 1, small ubiquitin-like modifier 1 (.1) Potri.002G224800 [exp] 50 / 5e-08 AT5G55160 172 / 3e-57 small ubiquitin-like modifier 2 (.1.2) Potri.014G158300 [exp] 49 / 6e-08 AT5G55160 171 / 5e-57 small ubiquitin-like modifier 2 (.1.2) Potri.014G190300 [exp] 45 / 3e-06 AT5G55160 168 / 7e-56 small ubiquitin-like modifier 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000234 [exp] 148 / 3e-44 AT1G68185 154 / 1e-46 Ubiquitin-like superfamily protein (.1) Lus10034627 [exp] 148 / 3e-44 AT1G68185 154 / 1e-46 Ubiquitin-like superfamily protein (.1) Lus10035259 [exp] 144 / 2e-42 AT1G68185 156 / 3e-47 Ubiquitin-like superfamily protein (.1) Lus10043185 [exp] 48 / 2e-07 AT5G55160 174 / 4e-58 small ubiquitin-like modifier 2 (.1.2) Lus10032560 [exp] 48 / 2e-07 AT5G55160 174 / 4e-58 small ubiquitin-like modifier 2 (.1.2) Lus10032561 [exp] 48 / 2e-07 AT5G55160 174 / 4e-58 small ubiquitin-like modifier 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF11976 [poplar] [flax] Rad60-SLD Ubiquitin-2 like Rad60 SUMO-like
Representative CDS sequence Show only first row Show all	>Potri.010G118900.1 pacid=42799691 polypeptide=Potri.010G118900.1.p locus=Potri.010G118900 ID=Potri.010G118900.1.v4.1 annot-version=v4.1 ATGGCTGATTCCGTTGAAGATCTTGATTCTCTATTTGATTACCGTCGCGTGCAGCCTATCGCAATCCTTGACGAGGACGACGACGACGACGAATATGATA AGCCACCAGTTCCTTCTCCTAAAAAAAGGAAGATTTCCAAGCATAACGTGGAGATTGTTGGCGGTGATCGTGAAGCAAGCCAAGTGACTAATGACGATGA GGATTGGCTACTTCCTCCTCCTAAGGACTCCAGTGAGTCCCCGAAGCAGATTGATGAGGACTCAACTATTAAAGAGCTGAGGTTAAGGAAGCAGGAGCTA AAAGCTTTGACAAGTAAAGAGTGTTTGTTTCAATATCTGGAGTCACCAAACAGACAAAGTGATTCAGTGCAGGCTGATCTGGAGTCTGGGGCTGAGCAAC CATCAAAGCCTCATCATGAAAGAGCTAAAATAGTTATTTCAATTCAAGACAAGGATGAAGTCAAACAATTTCGTGTGTACAAGGATGAAAAGTTTGAGCG GCTCTTCAAACGGTATGCTGATAAAGTTAAGCTTGGAATTGAGAGCCTAGTTTTTATGTTTGATGGGGACAAAATCAATCTGACGGCCACCCCTGATAGT CTTGGAATGGACGATGAGGACATTATTGAAGTGCTTGCAAAGAAAAGCTGA
AA sequence Show only first row Show all	>Potri.010G118900.1 pacid=42799691 polypeptide=Potri.010G118900.1.p locus=Potri.010G118900 ID=Potri.010G118900.1.v4.1 annot-version=v4.1 MADSVEDLDSLFDYRRVQPIAILDEDDDDDEYDKPPVPSPKKRKISKHNVEIVGGDREASQVTNDDEDWLLPPPKDSSESPKQIDEDSTIKELRLRKQEL KALTSKECLFQYLESPNRQSDSVQADLESGAEQPSKPHHERAKIVISIQDKDEVKQFRVYKDEKFERLFKRYADKVKLGIESLVFMFDGDKINLTATPDS LGMDDEDIIEVLAKKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68185			Ubiquitin-like superfamily pro...		Potri.010G118900 [exp]	0	1
AT5G54130			Calcium-binding endonuclease/e...		Potri.014G108200 [exp]	7.81	0.5848
AT3G60830		ATARP7	actin-related protein 7 (.1)		Potri.009G060200 [exp]	12.84	0.5730	ARP902,Pt-ARP7.2
AT5G12240			unknown protein		Potri.001G274400 [exp]	18.11	0.5707
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Potri.001G471500 [exp]	35.72	0.5150
AT1G43770			RING/FYVE/PHD zinc finger supe...		Potri.005G189400 [exp]	40.69	0.5340
AT2G14520			CBS domain-containing protein ...		Potri.001G288000 [exp]	70.69	0.4951
AT1G02410			cytochrome c oxidase assembly ...		Potri.001G078500 [exp]	75.94	0.4833
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Potri.014G060900 [exp]	89.77	0.4556	Pt-VAP27.5
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Potri.007G024300 [exp]	106.01	0.4721
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Potri.009G037700 [exp]	249.07	0.3920	Pt-TOPP1.1

Compare expression of checked genes

Potri.010G118900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.