Plant FIBer expression Database

Pt-PAP2.2 (Potri.010G119300) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-PAP2.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G15080 453 / 3e-162 ATLPP2, LPP2, ATPAP2 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
AT3G02600 383 / 6e-134 ATLPP3, LPP3 lipid phosphate phosphatase 3 (.1.2.3.4.5)
AT2G01180 354 / 5e-123 ATLPP1, ATPAP1 LIPID PHOSPHATE PHOSPHATASE 1, phosphatidic acid phosphatase 1 (.1.2)
AT3G18220 349 / 1e-120 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G119500
[exp]
388 / 1e-135 AT3G02600 460 / 1e-163 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Potri.010G119400
[exp]
385 / 7e-135 AT3G02600 407 / 9e-143 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Potri.004G095400
[exp]
380 / 6e-132 AT3G02600 465 / 1e-164 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Potri.008G124900
[exp]
363 / 5e-126 AT3G02600 420 / 3e-148 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034629
[exp]
452 / 3e-161 AT1G15080 442 / 4e-158 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
Lus10035261
[exp]
447 / 1e-159 AT1G15080 443 / 2e-158 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
Lus10009155
[exp]
378 / 3e-130 AT3G02600 488 / 1e-172 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10028489
[exp]
363 / 3e-126 AT3G02600 465 / 1e-166 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10007933
[exp]
375 / 4e-124 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Lus10035262
[exp]
352 / 2e-121 AT3G02600 429 / 3e-151 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10034630
[exp]
337 / 1e-115 AT3G02600 418 / 4e-147 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10013470
[exp]
288 / 2e-97 AT3G02600 326 / 1e-112 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10013469
[exp]
79 / 4e-16 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0525 pap2 PF01569 PAP2 PAP2 superfamily
Representative CDS sequence
>Potri.010G119300.4 pacid=42799428 polypeptide=Potri.010G119300.4.p locus=Potri.010G119300 ID=Potri.010G119300.4.v4.1 annot-version=v4.1
ATGCCGGATATCCAGTTGGGTGCTCACACTGTAAAATCCCATGGAATCCAAATTGCGAGGACACATATGCATGACTGGTTAATTCTATTGCTTCTCGTGG
TTATTGAGGTCGTTTTGAACGTTATAGAACCATTTCACCGCTTTGTTGGAAAGGATATGCTGACAGACCTGTCATACCCACTGCAGGACAATACTGTTCC
TATTTGGGCTGTTCCAATTGTTGCAATATTGCTGCCCATGGCTATCATTCTCGTGTATTATTTCATAAGAAGGAATGTCTACGATATGCACCATGCCATT
CTGGGCCTTCTGTTTTCTGTGCTTATCACTGGAGTTATAACTGATGCAATTAAAGATGCTGTTGGTCGACCTCGTCCAGACTTCTTTTGGCGATGTTTCC
CTGATGGAAAAGGGGTGTTTCACCCTGTCACAAGCGATGTTATGTGTACTGGAGTGAAGAGTGTCATCAAGGAAGGTCATAAAAGCTTCCCAAGTGGACA
TACTTCTTGGTCCTTTGCAGGTCTTGGGTTCCTGGCCTTGTACTTGTCTGGGAAAGTCAGAGTGTTTGACCGCAGGGGCCATGTTGCAAAGCTTTGTATT
GTTTTCCTTCCATTGCTTGTTGCTGCTTTGGTAGCAGTTTCTCGGGTTGATGACTACTGGCATCATTGGCAAGATGTATTTGCTGGGGCCCTTATAGGGC
TAACAGTTGCTTCATTTTGCTACTTGCAATTCTTCCCACCCCCATATGATGTCGATGGCTGGGGACCTCACGCATATTTCCAGATGTTGGCAGAGTCTCG
AAATGGAGCTGAGTCATCCAATAACATCAACTGTTTCAACGCGCAGCAATCAGAACTTGAGAGTGTATATATTGATTCTCAACGTGGAACTGAAACTTCA
AGAGTCAATACTCGGGACACTAGGCCAATGCTGGAGGGAGCATAG
AA sequence
>Potri.010G119300.4 pacid=42799428 polypeptide=Potri.010G119300.4.p locus=Potri.010G119300 ID=Potri.010G119300.4.v4.1 annot-version=v4.1
MPDIQLGAHTVKSHGIQIARTHMHDWLILLLLVVIEVVLNVIEPFHRFVGKDMLTDLSYPLQDNTVPIWAVPIVAILLPMAIILVYYFIRRNVYDMHHAI
LGLLFSVLITGVITDAIKDAVGRPRPDFFWRCFPDGKGVFHPVTSDVMCTGVKSVIKEGHKSFPSGHTSWSFAGLGFLALYLSGKVRVFDRRGHVAKLCI
VFLPLLVAALVAVSRVDDYWHHWQDVFAGALIGLTVASFCYLQFFPPPYDVDGWGPHAYFQMLAESRNGAESSNNINCFNAQQSELESVYIDSQRGTETS
RVNTRDTRPMLEGA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G15080 ATLPP2, LPP2, A... PHOSPHATIDIC ACID PHOSPHATASE ... Potri.010G119300
[exp]
0 1 Pt-PAP2.2
AT4G22730 Leucine-rich repeat protein ki... Potri.003G115100
[exp]
2.64 0.8044
AT5G57100 Nucleotide/sugar transporter f... Potri.006G072500
[exp]
4.47 0.7554
AT3G19300 Protein kinase superfamily pro... Potri.009G100400
[exp]
8.77 0.7538
AT4G16490 ARM repeat superfamily protein... Potri.016G010800
[exp]
8.94 0.7143
AT3G10980 SAG20, WI12, AT... PLAC8 family protein (.1) Potri.016G129700
[exp]
9.79 0.7343
AT4G11090 TBL23 TRICHOME BIREFRINGENCE-LIKE 23... Potri.003G137800
[exp]
10.09 0.7067
AT4G12080 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localize... Potri.014G070000
[exp]
10.58 0.7598
AT5G16000 NIK1 NSP-interacting kinase 1 (.1) Potri.017G108000
[exp]
11.13 0.7902
AT2G47140 AtSDR5 short-chain dehydrogenase redu... Potri.015G104800
[exp]
11.48 0.7663
AT3G13000 Protein of unknown function, D... Potri.007G003900
[exp]
12.04 0.7675

Potri.010G119300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.