Plant FIBer expression Database

Potri.010G119400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G02600 408 / 3e-143 ATLPP3, LPP3 lipid phosphate phosphatase 3 (.1.2.3.4.5)
AT2G01180 381 / 8e-133 ATLPP1, ATPAP1 LIPID PHOSPHATE PHOSPHATASE 1, phosphatidic acid phosphatase 1 (.1.2)
AT1G15080 362 / 9e-126 ATLPP2, LPP2, ATPAP2 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
AT3G18220 285 / 4e-95 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G124900
[exp]
520 / 0 AT3G02600 420 / 3e-148 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Potri.017G119500
[exp]
441 / 4e-156 AT3G02600 460 / 1e-163 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Potri.004G095400
[exp]
424 / 8e-149 AT3G02600 465 / 1e-164 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Potri.010G119300
[exp]
375 / 1e-130 AT1G15080 452 / 1e-161 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009155
[exp]
406 / 3e-141 AT3G02600 488 / 1e-172 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10028489
[exp]
399 / 6e-140 AT3G02600 465 / 1e-166 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10035262
[exp]
394 / 1e-137 AT3G02600 429 / 3e-151 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10007933
[exp]
408 / 8e-137 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Lus10034630
[exp]
376 / 2e-130 AT3G02600 418 / 4e-147 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10034629
[exp]
351 / 4e-121 AT1G15080 442 / 4e-158 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
Lus10035261
[exp]
348 / 6e-120 AT1G15080 443 / 2e-158 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
Lus10013470
[exp]
329 / 1e-113 AT3G02600 326 / 1e-112 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10013469
[exp]
90 / 2e-19 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0525 pap2 PF01569 PAP2 PAP2 superfamily
Representative CDS sequence
>Potri.010G119400.1 pacid=42800108 polypeptide=Potri.010G119400.1.p locus=Potri.010G119400 ID=Potri.010G119400.1.v4.1 annot-version=v4.1
ATGGCGTGGAGGAACATGATGTCATATTTTTCTCTCCCGGATTTCCGTGGTATCTTTCAGGGCAGAGTGAGGCAGGCGGGGATGGGTACACACACTATCA
AATCTCATGGAGCCAAACTTGCGAGGGATCACATGCACGATTGGCTTATTTTACTGCTACTTGTGGTGATTGAGGTCATTCTCTACGTAATCCATCCATT
TTATCGGTTCGTGGGAAAGGATATGATGACAGACCTGAAATATCCCTTGAAAGAGAACACAGTACCTGTATGGACCGTGCCTTTGTATGCAGTTTTGTTG
CCCGTTGCTGTTTTCCTTTTAGTTTATATTAGAAGAAAAGACGTCTATGATCTGCATCACAGCATCTTAGGCCTCTTATTTTCTGTGCTGATTACTGCTG
TCATCACGGATGCAATAAAAAATGCTGTTGGCAGGCCTCGACCAGACTTCTTTTGGCGTTGCTTTCCTGACGGGAAGGATCTCTATGATAGGTGGGGAAA
TGTAATATGTCATGGTAAAGGAAGTGACGTTAAGGAAGGACATAAAAGTTTCCCAAGTGGTCATACTTCATGGTCCTTTGCTGGATTAGGTTTTCTCTCA
CTCTACTTATCTGGAAAAATCAAGGCATTTGATCGGAAAGGGCATGTGGCAAAACTATGCATTGTTTTTCTTCCTCTACTTGCTGCGTCTCTTGTCGCCA
TCTCTCGAATTGATGATTACTGGCATCATTGGCAAGATGTGTTCGCTGGAGGCCTTCTAGGGCTGGTTGTGGCAACATTCTGCTATGCACAGTTTTTCCC
ACCCCCTTACACCGATGAAGGATGGGGACCTTATGCATATTTCCAGGCTTTGGAGGAGTCACGTTCCAATACAAATGCAGGGCAGTCTATGAATGCACTT
GATTTGCAGCCCGTGAATGCCCATGTCGTGAGTCAACAAGGCAGGCAAAACGGAGATGACTTTGCCTCCTTGGAGGAATTGGAATCCGGAAGGATGTGA
AA sequence
>Potri.010G119400.1 pacid=42800108 polypeptide=Potri.010G119400.1.p locus=Potri.010G119400 ID=Potri.010G119400.1.v4.1 annot-version=v4.1
MAWRNMMSYFSLPDFRGIFQGRVRQAGMGTHTIKSHGAKLARDHMHDWLILLLLVVIEVILYVIHPFYRFVGKDMMTDLKYPLKENTVPVWTVPLYAVLL
PVAVFLLVYIRRKDVYDLHHSILGLLFSVLITAVITDAIKNAVGRPRPDFFWRCFPDGKDLYDRWGNVICHGKGSDVKEGHKSFPSGHTSWSFAGLGFLS
LYLSGKIKAFDRKGHVAKLCIVFLPLLAASLVAISRIDDYWHHWQDVFAGGLLGLVVATFCYAQFFPPPYTDEGWGPYAYFQALEESRSNTNAGQSMNAL
DLQPVNAHVVSQQGRQNGDDFASLEELESGRM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G02600 ATLPP3, LPP3 lipid phosphate phosphatase 3 ... Potri.010G119400
[exp]
0 1
AT3G07510 unknown protein Potri.002G239500
[exp]
3.31 0.8706
AT2G30230 unknown protein Potri.019G123900
[exp]
3.74 0.8240
AT3G51780 ATBAG4 BCL-2-associated athanogene 4 ... Potri.009G074300
[exp]
9.48 0.8592
AT5G13420 Aldolase-type TIM barrel famil... Potri.003G161900
[exp]
13.63 0.8533
AT1G11910 ATAPA1, APA1 aspartic proteinase A1 (.1) Potri.004G007600
[exp]
14.69 0.8460
AT3G10540 3-phosphoinositide-dependent p... Potri.008G028800
[exp]
16.09 0.7971
AT5G66870 AS2 LBD36, ASL1 LATERAL ORGAN BOUNDARIES DOMAI... Potri.005G134900
[exp]
18.33 0.8266 LBD36.2
AT2G40410 Staphylococcal nuclease homolo... Potri.008G074800
[exp]
19.36 0.8206
AT4G36220 CYP84A1, FAH1, ... ferulic acid 5-hydroxylase 1 (... Potri.007G016400
[exp]
22.13 0.8396 CAld5H/F5H4,Pt-FAH1.4
AT1G11190 ENDO1, BFN1 ENDONUCLEASE 1, bifunctional n... Potri.011G044500
[exp]
25.92 0.8057 BFN1.1

Potri.010G119400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.