Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01190 388 / 9e-125 PDE331 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) AT3G18230 191 / 1e-51 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G09620 130 / 7e-32 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G64430 129 / 3e-31 Octicosapeptide/Phox/Bem1p family protein (.1) AT4G05150 127 / 4e-31 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G25300 105 / 5e-25 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G16220 99 / 9e-22 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G49920 94 / 4e-21 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G79570 95 / 8e-20 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 94 / 2e-19 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G124700 [exp] 733 / 0 AT2G01190 430 / 3e-141 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.012G053500 [exp] 255 / 4e-75 AT3G18230 298 / 6e-92 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.009G080200 [exp] 139 / 7e-35 AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G285800 [exp] 136 / 5e-34 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G032200 [exp] 134 / 8e-34 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.011G041100 [exp] 127 / 5e-31 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G095600 [exp] 110 / 3e-25 AT5G16220 140 / 2e-36 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.002G108800 [exp] 108 / 5e-25 AT5G09620 146 / 3e-39 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.017G119100 [exp] 107 / 2e-24 AT5G16220 126 / 2e-31 Octicosapeptide/Phox/Bem1p family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007952 [exp] 341 / 7e-107 AT2G01190 444 / 1e-146 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10034643 [exp] 144 / 7e-38 AT2G01190 186 / 1e-53 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10007965 [exp] 146 / 1e-37 AT2G01190 184 / 1e-51 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10035641 [exp] 133 / 3e-35 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10042925 [exp] 135 / 1e-33 AT5G09620 236 / 7e-72 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10002588 [exp] 134 / 3e-33 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10013486 [exp] 130 / 1e-32 AT2G01190 204 / 5e-59 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10013495 [exp] 134 / 2e-32 AT2G01190 176 / 1e-46 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10018412 [exp] 117 / 1e-27 AT4G05150 304 / 1e-98 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10033570 [exp] 116 / 3e-27 AT5G16220 194 / 9e-56 Octicosapeptide/Phox/Bem1p family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Potri.010G119500.1 pacid=42797496 polypeptide=Potri.010G119500.1.p locus=Potri.010G119500 ID=Potri.010G119500.1.v4.1 annot-version=v4.1 ATGGACCCACCACCTCTCTCCGCCGCCGCAACCACCACCACCACCACCCTCCCCACCCCCAATTCATATCCAGACTCCATTGACTCCTCCCCTCGCTCCC GCAACACCGATTCCAACTACTTCGACGACCCACTGCCCCCTCTCTCTTCAAAACTCCGCCTTATGTGCTCTTATGGCGGCCACATAGTCCCTCGCCCACA CGACAAGTCGTTGTGCTACGTAGGAGGCGACACCCGCATCGTCGTCGTCGACCGTCACTCAACTCTCTCCTCACTCTCCTCTCGCCTCTCCAACACTCTC CTTAACGGCCTACCCTTCATTTTTAAGTACCAACTCCCAAGCGAAGACTTGGATTCTCTGATTTCCGTCACTACAGATGAAGATTTAGAAAACATGATCG ATGAGTATGACCGGACGAATAGCAACAACGGTCCAAAACCGTCGCGTTTGCGCCTCTTTCTGTTCCCTTTGAAGCCGGAGTTGTCGCAGTCTATTGGGCC AATTCTTGAAAACAGTGCGAAATCGGAAGATTGGTTCTTGAATGCTTTGAACGGAGCTGCTGCCGCGGGGTTGTTGAACCGAGGTTTTTCAGATTCTGCT TCGGTTAATTGTTTGTTGGGTCTTGATTACAATGATAGCAGTGATGGTTTAAATAATGGAAACAACAGTAATAATAACAGTAATGTTGATTTAGTTGCTG CTGCTGGTGGTAGTAGAGATGGGGAGGGGTCGAACAAGGGTGTTGTAAAGCAAGATGTTCATTCAGTTCCTGATTCTCCTATGCTGGAAACTACGTCGTC TTTTGGGTCTACTTCTTCTTCGCCTTCGCTTGCGAATTTGCCTCCGATAAGGGTTCATGTGGAGGATGGTGGTGGGGTTAGAGATCAGAAAGTGGCGGTG GGAATTGAGGATCAATTTGCTCAAATGACTGTCGGTGGTGCTGGTGCTGGTGTTGGGCAGAGGCAGGATGATGGGTTTGTGGTTCTGTCATCGCCGCCGC CGCCACCGATGCCTGTTGCGATTGCGTCGCCGGGTGTACCTGTTGGGGGTCAAGTGGTTGTTGGTGAGTATCAGAATCGGGTTTTCTCTGATGATGAGAG ATCCGACCATGGGGTTCCTGTTGCTTATAGAAAGCCACCGCAACCTCAGACTCAGGTGCAGACTTCGATTCCTCAGAACCAACAGAGGTCTGGCAGTGGT GGTGGTGCTATTGATTTGCCATCCCCAGAGTCAGTTTCAAGTGATAGTAGTCTAAGCAATGCTATAAATCGACAAAAGCCCATGATTTATCAGGACCAAA TTGTGCAAATCCCATCTGGAGCCAACAGGGTTGCTGCTCATCCTGTTGATTCGAAGATCAATACTATCTCTGATCCGAACACTCGAGTTCAGATTCAACA ACAGGTTCAGGATTCTGGGTATGTATTGCAGCACCAATTCGATCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACTGCAACAGCAACAGCAA CAGCAACAGCAACCGCAACAGCAACCACAACAACAGCAATTTATGCATGCTGGTGCTCATTATATTCAATATCATCCCACAGGGGCAGTGCCAATGTCGG CATATTATCCTGTATACCCTCCCCAGCAGCAACACCATCACCATCCTCAGATTGATCAGCAATACCCTGTGTACTATGTGCAGGCAAGGCAACCCCAAGC TTACAATTTACCTGTCCAACAACCTGGTATCAGTGAACCAACAACTACCATCCCTTCTAGCCGCCCTCAAACACCTCCCAATCCAAACATGTTGCCCACT CCCACAACTTTCAATCCCATGAGAAATGCTCACATTGCAAAAACTGAATTGGCTGCTTATAGAACAGCAACTCCAGGCACGCCACAGTTAGTTCAGGTCC CTTCCAACCAGCATCAACAGCAATATGTTGGTTACTCTCAAGTTCATCACCCTTCCCAGTCTGTTGCCCCTACTTCTGCTGGCACTGCTAATTATGGTTA TGAGTTTGGTGACCATGCACATGGTCAGATATACTATGCCCAGCCTATGGCACCCGCAATGCCTCAGTACCAAACTATGACAGCAGCTACTGCTGTAGCA TTGCCAGAATCTTCCGTACAGTTTGCCAGTGACAACATCAAGCAGCAGATCAGAAGTTCACAGGCAATGTAA
AA sequence Show only first row Show all	>Potri.010G119500.1 pacid=42797496 polypeptide=Potri.010G119500.1.p locus=Potri.010G119500 ID=Potri.010G119500.1.v4.1 annot-version=v4.1 MDPPPLSAAATTTTTTLPTPNSYPDSIDSSPRSRNTDSNYFDDPLPPLSSKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIVVVDRHSTLSSLSSRLSNTL LNGLPFIFKYQLPSEDLDSLISVTTDEDLENMIDEYDRTNSNNGPKPSRLRLFLFPLKPELSQSIGPILENSAKSEDWFLNALNGAAAAGLLNRGFSDSA SVNCLLGLDYNDSSDGLNNGNNSNNNSNVDLVAAAGGSRDGEGSNKGVVKQDVHSVPDSPMLETTSSFGSTSSSPSLANLPPIRVHVEDGGGVRDQKVAV GIEDQFAQMTVGGAGAGVGQRQDDGFVVLSSPPPPPMPVAIASPGVPVGGQVVVGEYQNRVFSDDERSDHGVPVAYRKPPQPQTQVQTSIPQNQQRSGSG GGAIDLPSPESVSSDSSLSNAINRQKPMIYQDQIVQIPSGANRVAAHPVDSKINTISDPNTRVQIQQQVQDSGYVLQHQFDQQQQQQQQQQQQQLQQQQQ QQQQPQQQPQQQQFMHAGAHYIQYHPTGAVPMSAYYPVYPPQQQHHHHPQIDQQYPVYYVQARQPQAYNLPVQQPGISEPTTTIPSSRPQTPPNPNMLPT PTTFNPMRNAHIAKTELAAYRTATPGTPQLVQVPSNQHQQQYVGYSQVHHPSQSVAPTSAGTANYGYEFGDHAHGQIYYAQPMAPAMPQYQTMTAATAVA LPESSVQFASDNIKQQIRSSQAM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Potri.010G119500 [exp]	0	1
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Potri.008G124700 [exp]	1.41	0.9091
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Potri.001G235500 [exp]	3.16	0.9186	Pt-MYB111.2,MYB206
AT1G80450			VQ motif-containing protein (....		Potri.018G016500 [exp]	7.54	0.8365
					Potri.005G135601 [exp]	12.12	0.8795
					Potri.006G104150 [exp]	16.43	0.8406
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Potri.004G036400 [exp]	18.43	0.8232
					Potri.006G250500 [exp]	21.63	0.8162
AT4G17565			F-box family protein with a do...		Potri.004G134900 [exp]	22.31	0.8815
AT3G54940			Papain family cysteine proteas...		Potri.010G228400 [exp]	23.62	0.8758
					Potri.006G023450 [exp]	28.70	0.7912

Compare expression of checked genes

Potri.010G119500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.