Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49540 1169 / 0 ELP2, AtELP2 Elongator subunit 2, elongator protein 2 (.1.2) AT1G49040 55 / 3e-07 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) AT2G26060 53 / 5e-07 EMB1345 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G43770 51 / 2e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 50 / 4e-06 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G01330 50 / 6e-06 nucleotide binding (.1.2) AT4G32990 49 / 8e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT1G73720 49 / 9e-06 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT5G25150 49 / 2e-05 TAF5 TBP-associated factor 5 (.1) AT5G52820 49 / 2e-05 WD-40 repeat family protein / notchless protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G124550 [exp] 55 / 2e-09 AT1G49540 47 / 9e-08 Elongator subunit 2, elongator protein 2 (.1.2) Potri.013G079600 [exp] 57 / 7e-08 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Potri.001G221000 [exp] 56 / 7e-08 AT2G26060 523 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G049200 [exp] 55 / 2e-07 AT3G18060 1018 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G212800 [exp] 54 / 2e-07 AT2G26060 530 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.019G047300 [exp] 54 / 3e-07 AT5G16750 794 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Potri.015G087200 [exp] 54 / 4e-07 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G144400 [exp] 52 / 1e-06 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.015G041200 [exp] 52 / 1e-06 AT3G18060 1000 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013487 [exp] 1271 / 0 AT1G49540 1113 / 0.0 Elongator subunit 2, elongator protein 2 (.1.2) Lus10007953 [exp] 1203 / 0 AT1G49540 1051 / 0.0 Elongator subunit 2, elongator protein 2 (.1.2) Lus10021365 [exp] 55 / 1e-07 AT2G26060 482 / 2e-172 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10042076 [exp] 54 / 3e-07 AT5G50230 767 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018081 [exp] 53 / 1e-06 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 51 / 2e-06 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003390 [exp] 49 / 2e-06 AT2G43770 236 / 6e-79 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 51 / 3e-06 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027252 [exp] 51 / 4e-06 AT3G18060 979 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10038960 [exp] 51 / 4e-06 AT3G18060 971 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.010G119600.1 pacid=42799906 polypeptide=Potri.010G119600.1.p locus=Potri.010G119600 ID=Potri.010G119600.1.v4.1 annot-version=v4.1 ATGAGTGGAAATAAAGAAGAGAGTGAGGTTGAAGTGAAGAGCGTGTTCATAGGAGCAGGATGCAACAGAGTAGTGAATAACGTTTCTTGGGGCGCCTCTG ATTTGGTTTCCTTCGGTTCCCAGAATGCTGTCGCTATTTTCTGTCCCAAGACTGCTCAGATTCTGACTACACTTCCTGGTCACAAGGCCTCTGTCAACTG CACTCACTGGATTCCAGGCACAAAGTTTGCTTTTAAAGCAAAACAATTAGACCGTCATTACCTGCTTTCTGGAGACACTGATGGTGCTATTATTCTATGG GAGTTAACTCTTGCAGTCAAAAAGTGGAGGCAAGTGTTGCAGTTGCCACAATCACACAAGAAGGGGGTTACATGCATAACTGGAATTATGGTTTCTGAAA CAGATGCAATTTTTGCATCGACTTCTTCTGATGGTACAGTTTATGTGTGGGAACTGGTCCTACCTTCTACTGCTGGAGGTGAATGTAAATTGTCATGTCT GGAGACCCTATTTGTTGGTTCAAAGCCTATGGTGGCTCTTTCATTGGCAGAATTGCCTGGAAATTCTGGGCATATGGTCCTTGCTATGGGGGGATTGGAT AACAAAATTCATCTTTACTGTGGGGAGAGGACAGGAAAGTTTGTTCATGCTTGCGATTTGAAAGCACATACAGATTGGATCAGGAGTTTGGACTTCTCAT TGCCCATATGTAATGATGAAGCAAACAGCATTCTGCTTGTAAGTTCGTCTCAGGACAAAGGCATCCGCATATGGAAGATGACCCTTAGGGGTTCACTGAC CAACAACCAGGGTACATATAGGAAAGAGGAAATAAGCCTGGCATCTTATATTGAGGGTCCTGTACTTGTTGCTGGCTCTTCCTCCTATCAGATATCTTTA GAGTCTCTCTTAATTGGACATGAAGATTGGGTGTATTCAGTGGAGTGGCAGCCCCCTTCAATTACTTCTGTAGAAGAAACTACATACCATCAGCCACAAA GCATTCTGTCTGCTTCAATGGACAAGACAATGATGATCTGGCAACCTGAAAGGAAAACTGGTATCTGGATGAATGTGGTCACTGTTGGGGAGTTAAGTCA TTCTGCTCTAGGATTTTATGGGGGCCACTGGAGCCGAGATGGAAATGCAATTCTAGCACATGGATATGGTGGGGCTTTCCATCTATGGAAAAATGTTGGT GTTGATGTGGATCATTGGCAACCACAGAAAGTTCCATCTGGGCACTTTGCTGCAGTGACAGATATTGCATGGGCGAGGTCTGGAGAATACATGATATCAG TTAGTCTTGACCAGACAACTCGTATTTTTGCTCCATGGAAAAACAGTGCTTTTCTCACAGACGAGGAATCCTGGCATGAAATTGCTCGCCCTCAGATTCA TGGCCATGACATCAATTGTGTGGCCATCATCCAAGGAAAGGGGAACCATCGTTTTGTTGGTGGAGCTGACGAGAAAGTTGCTAGAGTGTTTGAAGCTCCT TTATCCTTTTTGAAGACACTGAATCTTGCCACTTGTCAAAAGTCTAGTTTTCCTGAAAACCTTCAAGTTGATGTTCAGATTTTGGGTGCAAATATGTCCG CTCTTGGCCTGTCTCAGAAGCCTATTTATGTTAACACTGTGCAGGAGACCCCAGAAAGGAATGGGAATGATGGTCTCGATACCCTCGAAAGCATTCCTGA TGCAGTTCCAGTTGTGTTCACTGAACCTCCCATTGAAGATCAGTTGGCATACCACATATTATGGCCAGAGTCACACAAACTTTATGGTCATGGAAACGAG CTTTTTTCCCTAAGCTGTGATCATGAGGGGAAGCTTGTCGCTTCCTCGTGTAAGGCCCAGTCTGCCATGGTAGCAGAAATATGGCTATGGCAAGTGGGCT CCTGGAAGGCAGTTGGTCGTTTGCAGGCACATAGCTTAACAGTGACACAAATGGAATTCTCTCGTGATGACAGTATGCTTTTGGCTGTGTCAAGAGATAG GCAGTTCTCCGTTTTCGCAATCAAAAGAACAGGCACAGATGAAGTTAGTTATCAGCTTCTAGCAAGACAGGAGGCACACAAGAGAATTATATGGTCTTGT TCCTGGAACCCGTTTGGTCACCAATTTGCAACTGGTTCCAGGGACAAGACAGTGAAGATCTGGGCCGTAGAGCAAGACTCATCAGTTAAACAGATGATGA CTTTGCCACAGTTCAGCAGCAGTGTCACTGCCCTGTCATGGGTCGGTATTGATCGTCAAAGTAATCATGGGCTTCTTGCAGTTGGAATGGAAAATGGACT CATCGAATTGTGGAGTCTTACCATCAATAAGAGTGCAGCTGCCAATCTTGCAGTCCGGTTCGATACTTCATTGTGCCATGTGTCTTCAGTGAATCGACTG TCATGGAGAAACCCTGAAAAGAGTGAAGAATGCAGGCGAATGCAACTGGCTTCTTGTGGAGCTGATCAATGTGTGAGAGTGTTTGATGTGATTACTAAGT AA
AA sequence Show only first row Show all	>Potri.010G119600.1 pacid=42799906 polypeptide=Potri.010G119600.1.p locus=Potri.010G119600 ID=Potri.010G119600.1.v4.1 annot-version=v4.1 MSGNKEESEVEVKSVFIGAGCNRVVNNVSWGASDLVSFGSQNAVAIFCPKTAQILTTLPGHKASVNCTHWIPGTKFAFKAKQLDRHYLLSGDTDGAIILW ELTLAVKKWRQVLQLPQSHKKGVTCITGIMVSETDAIFASTSSDGTVYVWELVLPSTAGGECKLSCLETLFVGSKPMVALSLAELPGNSGHMVLAMGGLD NKIHLYCGERTGKFVHACDLKAHTDWIRSLDFSLPICNDEANSILLVSSSQDKGIRIWKMTLRGSLTNNQGTYRKEEISLASYIEGPVLVAGSSSYQISL ESLLIGHEDWVYSVEWQPPSITSVEETTYHQPQSILSASMDKTMMIWQPERKTGIWMNVVTVGELSHSALGFYGGHWSRDGNAILAHGYGGAFHLWKNVG VDVDHWQPQKVPSGHFAAVTDIAWARSGEYMISVSLDQTTRIFAPWKNSAFLTDEESWHEIARPQIHGHDINCVAIIQGKGNHRFVGGADEKVARVFEAP LSFLKTLNLATCQKSSFPENLQVDVQILGANMSALGLSQKPIYVNTVQETPERNGNDGLDTLESIPDAVPVVFTEPPIEDQLAYHILWPESHKLYGHGNE LFSLSCDHEGKLVASSCKAQSAMVAEIWLWQVGSWKAVGRLQAHSLTVTQMEFSRDDSMLLAVSRDRQFSVFAIKRTGTDEVSYQLLARQEAHKRIIWSC SWNPFGHQFATGSRDKTVKIWAVEQDSSVKQMMTLPQFSSSVTALSWVGIDRQSNHGLLAVGMENGLIELWSLTINKSAAANLAVRFDTSLCHVSSVNRL SWRNPEKSEECRRMQLASCGADQCVRVFDVITK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49540		ELP2, AtELP2	Elongator subunit 2, elongator...		Potri.010G119600 [exp]	0	1
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.011G145800 [exp]	2.00	0.8484
AT2G20410			RNA-binding ASCH domain protei...		Potri.019G017900 [exp]	3.87	0.7907
AT3G15460			Ribosomal RNA processing Brix ...		Potri.001G403100 [exp]	4.24	0.7801
AT1G77550			tubulin-tyrosine ligases;tubul...		Potri.006G141900 [exp]	5.29	0.7976
AT5G67640			unknown protein		Potri.007G006000 [exp]	8.12	0.7888
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Potri.010G125600 [exp]	8.83	0.7747
AT5G55600			agenet domain-containing prote...		Potri.006G017400 [exp]	13.41	0.7986
AT1G80680		NUP96, SAR3, MO...	PRECOCIOUS, MODIFIER OF SNC1,3...		Potri.003G180100 [exp]	14.49	0.7730	PRE.1
AT1G75560			zinc knuckle (CCHC-type) famil...		Potri.004G161800 [exp]	15.74	0.7534
AT1G25472		CPuORF54	conserved peptide upstream ope...		Potri.010G125700 [exp]	19.39	0.7831

Compare expression of checked genes

Potri.010G119600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.