Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15060 750 / 0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) AT1G73750 357 / 7e-118 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G124400 [exp] 1023 / 0 AT1G15060 743 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Potri.012G053700 [exp] 538 / 0 AT1G15060 505 / 4e-175 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034107 [exp] 795 / 0 AT1G15060 774 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Lus10043481 [exp] 768 / 0 AT1G15060 762 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Lus10013496 [exp] 373 / 1e-122 AT1G15060 423 / 2e-142 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Lus10000099 [exp] 363 / 1e-122 AT1G15060 331 / 6e-111 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Lus10007966 [exp] 155 / 3e-41 AT1G73750 224 / 9e-69 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.010G119700.1 pacid=42799963 polypeptide=Potri.010G119700.1.p locus=Potri.010G119700 ID=Potri.010G119700.1.v4.1 annot-version=v4.1 ATGGCAACAACAATCCAATCAGATATTCGTTCCGCCCTACACGTAGCCAATCTCATCTTCATCAATCCCAATCTCATCCTCTCTCGCGCCACCGCTTCCT CTGCGCGGTGGTCTTTTTCTCCACGACCACTACTATCATCGTACCGTAGGATTTCAACTCCCACGTCGTTCCGAGCGAGAACGTTCTCCTCCGAGTCAAC TGAACCTGTCGTCAAGGTTCCAGAGAAGCCTCCGATTTGTACTGCCGATGAGCTCCACTATGTCTCCGTCTCCAACTCCGACTGGCGTCCCGCTCTCTGG CGCTACCATCCTTCTCCTCAGGCGCCTCCAAGGAATCATCCGCTGTTGCTATTGTCTGGACTCGGGACTAATGCCATTGGTTACGATCTCTCACCTGGGT CTTCCTTTGCACGGTACATGTCTGGCCAGGGATTTGAGACGTGGATTCTTGAGGTTCGGGGTGCTGGTTTGAGCGTACAGGGATCAACTCCCAAAGTTGT TCAGCAGGCTGCCCATGAAGTCTCTGAGCAGATGGAGGCTGTAACTAAGAGTATGGCAAATGGATCTTTGTCTACAGACCAGCAACCAAGTAAGGTTCCC AGTCCCGTGTCAGATTCTAGGGTTTCTTTTGTTGAAGAGGACCCACATCTGGCAGGGATTGTAACTGTGTGGGATGAATCAAAACTAGTGACAAAGTTGA CAGAAGTCTTCATGCGTTTGTCTGAGAGACTTTCTGGCTTTCTCAGTGAAAGTCAATCGAAGATTATGTTTGCAAAGCTAGTCGATCAGATAGCAAAAAT CTTAGAAGATTCTCAATTATCTGAACGCATGAACGAGATAAGGGGAAAGCTTTTGAGCTTGTTAGAAGCAAGACAAAACTCAGCTATTGCTGGTCAATTC AGGGATCTGAGTCAAGGGCTGGTTAATGTTATCGAGGAAGGTCAAAAATCTGTTTCTCCGCAGTTGTTTGACTTGCAAGAGCGTCTTTCATCAACCATAG AAGATTTCCAGAAACAACTTGACTTGATTGTGAAGTATGACTGGGACTTCGATAATTACCTGGAAGAGGATGTTCCTGCTGCGATGGAGTATATAAGGGC CCAAACCAAGCCAAAGGATGGTAAATTACTTGCTATTGGACACTCCATGGGAGGTATCTTGCTCTATGCAATGCTGTCACGATGCAGTTATGAAGGAAGA GACTCTGGATTGGCTGCTATTGGTACTCTAGCTTCATCACTTAACTACACACCTTCAAAGTCGAGACTCAAATTGCTTTTGCCCCTTGCAGACCCTGCTC AAGCTCTTAATGTACCTGTTGTTCCTTTGGGAGCAATGCTGTCAGCAGCATATCCTCTTTCAACCCGCCCTCCTTATGTCTTGTCTTGGCTTAATGATTT GATATCAGCACAGGACATGATGCATCCAGAGTTGTTGGAAAAGCTTGTCTTGAACAACTTTTGCACCATACCCGCAAAACTTATTTTACAGCTTGCAACA GCTTTTCGAAATGGTGGGTTGTGTGACAGGAGTGGTAAATTTTTCTACCAGGATCATCTGCATAAGAACAAAGTACCTGTATTAGCCATAGCAGGAGACC GAGATCTGATATGCCCACCAGTAGCTGTTGAAGAAACTGTTAAGCTCATCCCTGAGCATTTGGCCACCTACAAAGTGTTTGGAGAACCTGGAGGTCCTCA TTATGCACATTATGATTTGGTGGGAGGGAGACTGGCTGTGGAGCAAGTTTATCCTTGCATAATTGAATTTCTTAGCCGATATGACCTGACATGA
AA sequence Show only first row Show all	>Potri.010G119700.1 pacid=42799963 polypeptide=Potri.010G119700.1.p locus=Potri.010G119700 ID=Potri.010G119700.1.v4.1 annot-version=v4.1 MATTIQSDIRSALHVANLIFINPNLILSRATASSARWSFSPRPLLSSYRRISTPTSFRARTFSSESTEPVVKVPEKPPICTADELHYVSVSNSDWRPALW RYHPSPQAPPRNHPLLLLSGLGTNAIGYDLSPGSSFARYMSGQGFETWILEVRGAGLSVQGSTPKVVQQAAHEVSEQMEAVTKSMANGSLSTDQQPSKVP SPVSDSRVSFVEEDPHLAGIVTVWDESKLVTKLTEVFMRLSERLSGFLSESQSKIMFAKLVDQIAKILEDSQLSERMNEIRGKLLSLLEARQNSAIAGQF RDLSQGLVNVIEEGQKSVSPQLFDLQERLSSTIEDFQKQLDLIVKYDWDFDNYLEEDVPAAMEYIRAQTKPKDGKLLAIGHSMGGILLYAMLSRCSYEGR DSGLAAIGTLASSLNYTPSKSRLKLLLPLADPAQALNVPVVPLGAMLSAAYPLSTRPPYVLSWLNDLISAQDMMHPELLEKLVLNNFCTIPAKLILQLAT AFRNGGLCDRSGKFFYQDHLHKNKVPVLAIAGDRDLICPPVAVEETVKLIPEHLATYKVFGEPGGPHYAHYDLVGGRLAVEQVYPCIIEFLSRYDLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15060			Uncharacterised conserved prot...		Potri.010G119700 [exp]	0	1
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Potri.010G043900 [exp]	1.73	0.9172
AT5G36930			Disease resistance protein (TI...		Potri.019G019053 [exp]	4.69	0.9005
AT1G11580		ATPMEPCRA	methylesterase PCR A (.1)		Potri.011G025400 [exp]	4.89	0.8850
AT1G47710			Serine protease inhibitor (SER...		Potri.014G036000 [exp]	7.14	0.8549
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G010101 [exp]	7.48	0.8760
AT3G48520		CYP94B3	cytochrome P450, family 94, su...		Potri.005G220700 [exp]	8.48	0.8789	Pt-CYP94.7
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Potri.001G062500 [exp]	9.16	0.8954
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Potri.016G119300 [exp]	12.72	0.7705
AT5G36930			Disease resistance protein (TI...		Potri.019G007884 [exp]	14.38	0.8718
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Potri.005G236700 [exp]	15.74	0.8431

Compare expression of checked genes

Potri.010G119700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.