Plant FIBer expression Database

Potri.010G120200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G01220 589 / 0 Nucleotidylyl transferase superfamily protein (.1.2)
AT3G27610 540 / 0 Nucleotidylyl transferase superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032989
[exp]
586 / 0 AT2G01220 537 / 0.0 Nucleotidylyl transferase superfamily protein (.1.2)
Lus10015379
[exp]
532 / 0 AT3G01040 833 / 0.0 galacturonosyltransferase 13 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0039 HUP PF01467 CTP_transf_like Cytidylyltransferase-like
Representative CDS sequence
>Potri.010G120200.1 pacid=42799934 polypeptide=Potri.010G120200.1.p locus=Potri.010G120200 ID=Potri.010G120200.1.v4.1 annot-version=v4.1
ATGAGCGTGGAGAAGACGACCATGACGGACGCGTGGATTCGAGGTGTAGTGGAAGCCATACATTCTGCCCCTAATCAGGCTGTACTTTATCTCGCCGGTG
GTGCCTCTCAGGCACTAGGATGGTTGCTGTCAGTACCTGGAGCTTCAAATACAGTGCTTGAAGCTGTTGTTCCTTACTCTAGGATGTCCTTTATTCAATT
ACTTGGCAAGATTCCCAGTCAACATTGTAGTCAACAAACTGCAGAGGAAATGGCTCTATTAGCTTACAACCGTGGTCTCAAGCTTTCCAGCCCAGGTTAC
CCTGTTGTTGGTGTGGGTTTTACCGGTTCTTTAGCCAGCTCACGTCCGAAATTTGGGGATCACAGGTTTTACTTGTCAACAAGAACATCCGATCGACTTT
CAGTATCTACTGTTACATTGTCTAAGGGTTTGAGAACCCGGGAGCAAGAAGATACAGTTTCAAGTCATCTCTTACTCAAGGCTATTGCAAATGCATGCAA
AGTCCAGGCAGCATCTGTTTCTCATTTGACCGAATCTGACATGTCTGATGAACATGAAACACACTTCAGCGAAGATCAAGAATTGGAACAACTTATAGAT
GGGAAAATATGCTTTAAGGTTTATCCATTTTCAAGTGAGACTTATACACCTGCTGAGAGAAAGATAATACTTTCTGGTTCGTTTAATCCATTACACGACG
GTCACGTCAAGCTTTTGGAAGTTGCTACTAGCTTTTGTGGCAATGGATATCCCTGTTTTGAAATATCAGCAGTCAATGCTGACAAACCTCCACTATCAGT
ATCACAAATTAAGGACCGCATCAAGCAATTTGAAAAGGCTGGAAAGACAGTAATTATTTCCAATCAACCTTATTTCTATAAGAAGGCCGAGCTTTTTCCA
GGCAGTGCTTTTGTGATTGGCGCAGACACGGTGGCAAGGCTTATTAACCCTAAGTATTATGATGGAGACCATGGGAAGATGCTAGAGATACTTGATGGAT
GCAAAAGAATTGGGTGCACCTTCCTTGTAGGTGGCCGTAATGTGGATGGTGTCTTTAAGGTTCTCGAAGACTTCGACATTCCAGAGACATTGAAAGATAT
GTTTGTCTCAATACCAGCTGATAGGTTCCGCATAGATATTTCCTCCACAGAAATAAGAAATAGTGGTGGATTGTGA
AA sequence
>Potri.010G120200.1 pacid=42799934 polypeptide=Potri.010G120200.1.p locus=Potri.010G120200 ID=Potri.010G120200.1.v4.1 annot-version=v4.1
MSVEKTTMTDAWIRGVVEAIHSAPNQAVLYLAGGASQALGWLLSVPGASNTVLEAVVPYSRMSFIQLLGKIPSQHCSQQTAEEMALLAYNRGLKLSSPGY
PVVGVGFTGSLASSRPKFGDHRFYLSTRTSDRLSVSTVTLSKGLRTREQEDTVSSHLLLKAIANACKVQAASVSHLTESDMSDEHETHFSEDQELEQLID
GKICFKVYPFSSETYTPAERKIILSGSFNPLHDGHVKLLEVATSFCGNGYPCFEISAVNADKPPLSVSQIKDRIKQFEKAGKTVIISNQPYFYKKAELFP
GSAFVIGADTVARLINPKYYDGDHGKMLEILDGCKRIGCTFLVGGRNVDGVFKVLEDFDIPETLKDMFVSIPADRFRIDISSTEIRNSGGL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G01220 Nucleotidylyl transferase supe... Potri.010G120200
[exp]
0 1
AT2G28000 Cpn60alpha1, SL... SCHLEPPERLESS, chaperonin-60al... Potri.009G009300
[exp]
3.74 0.8274 SLP.1
AT1G77700 Pathogenesis-related thaumatin... Potri.003G020100
[exp]
7.34 0.7731
AT3G13470 Cpn60beta2 chaperonin-60beta2, TCP-1/cpn6... Potri.003G222400
[exp]
12.12 0.8014 Pt-LEN1.1
AT3G43540 Protein of unknown function (D... Potri.006G217700
[exp]
13.22 0.7769
AT1G02020 nitroreductase family protein ... Potri.002G146100
[exp]
14.69 0.7945
AT4G24280 CPHSC70-1 chloroplast heat shock protein... Potri.003G006300
[exp]
15.87 0.8064 HSC70.2
AT2G27500 Glycosyl hydrolase superfamily... Potri.004G202400
[exp]
16.94 0.7050
AT2G46230 PIN domain-like family protein... Potri.002G166200
[exp]
18.38 0.7256
AT1G53580 GLY3, GLX2-3, E... GLYOXALASE 2-3, ETHE1-LIKE, gl... Potri.005G204800
[exp]
21.07 0.7598
AT3G10110 MEE67 maternal effect embryo arrest ... Potri.001G281200
[exp]
23.23 0.7551

Potri.010G120200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.