Plant FIBer expression Database

Potri.010G120300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G68238 35 / 0.0004 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G054000
[exp]
37 / 9e-05 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G120300.1 pacid=42798624 polypeptide=Potri.010G120300.1.p locus=Potri.010G120300 ID=Potri.010G120300.1.v4.1 annot-version=v4.1
ATGGTGAGAGTTTGGAAAGAGACGATAAGAGGAGATGGAAAAATCTATGGTGAAGACTTGAGCAGTGCAGCTTTACTCTTCTGGGCTGCAATCGTCACTC
TTTCTATAATTGCATCTGTCATTTTATCTTGTGCCGGTGGTGCGTCGAAAGACAAAGCCTCTACTACTGATACTTATGGTACAACATGTGCTGGATGCGG
TGCGGCCTGTGGTGGATAA
AA sequence
>Potri.010G120300.1 pacid=42798624 polypeptide=Potri.010G120300.1.p locus=Potri.010G120300 ID=Potri.010G120300.1.v4.1 annot-version=v4.1
MVRVWKETIRGDGKIYGEDLSSAALLFWAAIVTLSIIASVILSCAGGASKDKASTTDTYGTTCAGCGAACGG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G120300
[exp]
0 1
AT4G02050 STP7 sugar transporter protein 7 (.... Potri.018G113300
[exp]
5.47 0.9389
AT5G38520 alpha/beta-Hydrolases superfam... Potri.019G063900
[exp]
6.08 0.9504
AT2G30950 FTSH2, VAR2 VARIEGATED 2, FtsH extracellul... Potri.002G215100
[exp]
15.16 0.9356
AT2G41705 camphor resistance CrcB family... Potri.005G174600
[exp]
18.97 0.9247
AT5G60900 RLK1 receptor-like protein kinase 1... Potri.003G212000
[exp]
19.49 0.9219
AT1G06430 FTSH8 FTSH protease 8 (.1) Potri.002G220366
[exp]
20.92 0.9296
AT3G11210 SGNH hydrolase-type esterase s... Potri.006G100300
[exp]
23.83 0.9368 CPRD49.3
AT1G65730 YSL7 YELLOW STRIPE like 7 (.1) Potri.017G150500
[exp]
24.89 0.9157
AT2G38290 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammo... Potri.019G000800
[exp]
29.73 0.9171
AT2G43945 unknown protein Potri.013G084300
[exp]
33.49 0.9146

Potri.010G120300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.