Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01260 367 / 9e-126 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) AT1G15030 358 / 4e-122 Protein of unknown function (DUF789) (.1) AT5G49220 270 / 6e-87 Protein of unknown function (DUF789) (.1) AT4G16100 241 / 5e-76 Protein of unknown function (DUF789) (.1) AT1G03610 201 / 8e-62 Protein of unknown function (DUF789) (.1) AT4G03420 199 / 9e-61 Protein of unknown function (DUF789) (.1) AT4G28150 178 / 3e-53 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G73210 166 / 5e-48 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G17830 158 / 6e-45 Protein of unknown function (DUF789) (.1) AT5G23380 85 / 3e-18 Protein of unknown function (DUF789) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G124000 [exp] 614 / 0 AT2G01260 384 / 1e-132 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.010G000700 [exp] 322 / 2e-107 AT5G49220 342 / 3e-115 Protein of unknown function (DUF789) (.1) Potri.008G213300 [exp] 316 / 6e-105 AT5G49220 338 / 2e-113 Protein of unknown function (DUF789) (.1) Potri.013G144000 [exp] 214 / 1e-66 AT4G03420 414 / 2e-146 Protein of unknown function (DUF789) (.1) Potri.019G103000 [exp] 204 / 2e-62 AT4G03420 427 / 2e-151 Protein of unknown function (DUF789) (.1) Potri.018G152500 [exp] 184 / 9e-55 AT1G17830 321 / 3e-109 Protein of unknown function (DUF789) (.1) Potri.017G155200 [exp] 181 / 9e-54 AT1G17830 328 / 9e-112 Protein of unknown function (DUF789) (.1) Potri.004G068700 [exp] 87 / 4e-18 AT1G73210 100 / 2e-22 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Potri.017G152601 [exp] 84 / 3e-17 AT1G03610 95 / 9e-21 Protein of unknown function (DUF789) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016841 [exp] 281 / 2e-91 AT4G16100 310 / 2e-102 Protein of unknown function (DUF789) (.1) Lus10037716 [exp] 281 / 2e-91 AT4G16100 311 / 4e-103 Protein of unknown function (DUF789) (.1) Lus10037717 [exp] 281 / 4e-88 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10016842 [exp] 221 / 9e-69 AT4G16100 272 / 8e-89 Protein of unknown function (DUF789) (.1) Lus10018572 [exp] 200 / 5e-61 AT4G03420 405 / 1e-142 Protein of unknown function (DUF789) (.1) Lus10031632 [exp] 166 / 2e-48 AT4G03420 345 / 2e-119 Protein of unknown function (DUF789) (.1) Lus10033707 [exp] 163 / 1e-46 AT4G03420 359 / 2e-124 Protein of unknown function (DUF789) (.1) Lus10038327 [exp] 162 / 2e-46 AT1G73210 319 / 1e-108 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10036189 [exp] 150 / 2e-41 AT1G73210 298 / 2e-99 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10039803 [exp] 138 / 5e-38 AT1G03610 303 / 2e-103 Protein of unknown function (DUF789) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05623 [poplar] [flax] DUF789 Protein of unknown function (DUF789)
Representative CDS sequence Show only first row Show all	>Potri.010G120700.2 pacid=42797452 polypeptide=Potri.010G120700.2.p locus=Potri.010G120700 ID=Potri.010G120700.2.v4.1 annot-version=v4.1 ATGTTGGGGACAGGATTGCAGTTAACGCGGGGACGAGGAGAAGAGGATCGGTTCTGTAATGCCGTGAAAGCGCGCAAAGCTCACCGGACCGATCAACTCC GTAGAGCACGAAGCGATGTTACTGACGATAAACCGGTTGAGAACCGGACCGATGATTTAGAGCACTTGACTAAACCGGTAAAAGTTGCTGTTCCGGCTTC TGAGAGTAACCTGGATCGATTTTTGGAGTCGATCACGCCTTCTGTTCCTGCACAGTATCCGTCCAAGACGACAATGCGGGGATGGAGAACGTGTGATGTC GAATTCGAGCCGTATTTCGTGCTGGGTGACTTGTGGGAATCTTTTAAAGAATGGAGTGCTTATGGTGCAGGAGTGCCTTTAATTTTGAATGATAGTGACT GTGTTGTTCAATATTATGTTCCTTATCTTTCTGGTATTCAAATATATGCCGATTCTACAAAAATGCCTCCCAAGTCAAGGCGATTGGGTGAGGATAGTGA CAGTGATTTTAGGGATTCAAGTAGTGATGGAAGCAGTGATTATGAGCATGAAAGAGGAGTGAAATGCTCAAGGGATCAATTGAATCATCATCATGTAACA GATGACTTTCCTCTTAGAATCGATAGATTATCGTTGAGAGATCAACACGTTGCCCATAAAGAGGACTTCTCCGGTGATGAGGGTGAATCTGTGAATTGTC AAGGTTGCTTGCTATTTGAGTATCTTGAACGAGACCCTCCCTACAGCCGGGAACCATTAGCTGATAAGATATTGGATCTTGCCTTCCGTTTCCCTGAGCT GAAGATGCTAAGAAGTTGTGATTTATTACCTTCAAGTTGGATTTCTGTGGCCTGGTACCCAATTTACAGAATACCCACCGGACCAACTTTAAAAGATCTG GATGCTTGCTTCCTTACATATCATTCTCTTCATACCTCATTGGGAGGTGGGCGAGTTGCACAGGCTCCTTTAATGACATATCCCAGTGAAGCGGATGGTA TGCCCAAGATATCCTTGCCTGTTTTTGGTTTCGCTTCCTATAAGTTCAAGGGGTCCTTGTGGACCTCTAATGGTGGAGGTGACCGCCAGCTGGCAAACTC GCTATTGCAGGCTGCTAGCAAATTTTTGAGACTGCTTCAGGTCAATCATCCAGACTTCTTGTTTTTCTGCCGAGGTGATACAAAGATATGA
AA sequence Show only first row Show all	>Potri.010G120700.2 pacid=42797452 polypeptide=Potri.010G120700.2.p locus=Potri.010G120700 ID=Potri.010G120700.2.v4.1 annot-version=v4.1 MLGTGLQLTRGRGEEDRFCNAVKARKAHRTDQLRRARSDVTDDKPVENRTDDLEHLTKPVKVAVPASESNLDRFLESITPSVPAQYPSKTTMRGWRTCDV EFEPYFVLGDLWESFKEWSAYGAGVPLILNDSDCVVQYYVPYLSGIQIYADSTKMPPKSRRLGEDSDSDFRDSSSDGSSDYEHERGVKCSRDQLNHHHVT DDFPLRIDRLSLRDQHVAHKEDFSGDEGESVNCQGCLLFEYLERDPPYSREPLADKILDLAFRFPELKMLRSCDLLPSSWISVAWYPIYRIPTGPTLKDL DACFLTYHSLHTSLGGGRVAQAPLMTYPSEADGMPKISLPVFGFASYKFKGSLWTSNGGGDRQLANSLLQAASKFLRLLQVNHPDFLFFCRGDTKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01260			Protein of unknown function (D...		Potri.010G120700 [exp]	0	1
					Potri.010G214500 [exp]	4.00	0.7082
AT2G19810	C3HZnF	AtOZF1	Oxidation-related Zinc Finger ...		Potri.018G058600 [exp]	4.47	0.7123
AT5G20260			Exostosin family protein (.1)		Potri.018G125058 [exp]	10.48	0.6542
AT3G26720			Glycosyl hydrolase family 38 p...		Potri.002G238200 [exp]	14.07	0.6546
AT1G33055			unknown protein		Potri.001G452500 [exp]	15.49	0.6561
AT1G78070			Transducin/WD40 repeat-like su...		Potri.005G168600 [exp]	22.58	0.6410
AT1G07380			Neutral/alkaline non-lysosomal...		Potri.016G110000 [exp]	24.24	0.6306
AT5G02520			unknown protein		Potri.004G077400 [exp]	24.85	0.6661
AT3G61590		HWS, HS	HAWAIIAN SKIRT, Galactose oxid...		Potri.002G166500 [exp]	31.74	0.6019
AT3G61690			nucleotidyltransferases (.1)		Potri.002G169732 [exp]	35.07	0.6668

Compare expression of checked genes

Potri.010G120700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.