Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18390 526 / 2e-178 Protein kinase superfamily protein (.1.2) AT1G25390 469 / 6e-157 Protein kinase superfamily protein (.1) AT5G38210 431 / 4e-141 Protein kinase family protein (.1) AT1G66880 425 / 9e-133 Protein kinase superfamily protein (.1) AT2G23450 282 / 2e-84 Protein kinase superfamily protein (.1.2) AT1G69910 265 / 1e-78 Protein kinase superfamily protein (.1) AT5G66790 259 / 1e-76 Protein kinase superfamily protein (.1) AT5G02070 243 / 3e-70 Protein kinase family protein (.1) AT1G67720 243 / 2e-68 Leucine-rich repeat protein kinase family protein (.1) AT3G53840 235 / 1e-67 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G120950 [exp] 587 / 0 AT5G38260 371 / 3e-120 Protein kinase superfamily protein (.1) Potri.015G045101 [exp] 580 / 0 AT1G18390 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G121100 [exp] 513 / 7e-174 AT1G25390 524 / 1e-179 Protein kinase superfamily protein (.1) Potri.004G076500 [exp] 511 / 7e-173 AT5G38260 409 / 1e-134 Protein kinase superfamily protein (.1) Potri.004G076100 [exp] 507 / 2e-171 AT5G38260 401 / 9e-132 Protein kinase superfamily protein (.1) Potri.012G054725 [exp] 495 / 1e-166 AT1G18390 516 / 2e-176 Protein kinase superfamily protein (.1.2) Potri.015G044750 [exp] 481 / 7e-161 AT1G18390 532 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G097100 [exp] 472 / 9e-158 AT5G38210 525 / 4e-179 Protein kinase family protein (.1) Potri.017G118100 [exp] 468 / 3e-155 AT5G38210 575 / 0.0 Protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016737 [exp] 569 / 0 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022432 [exp] 560 / 0 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10029132 [exp] 465 / 4e-155 AT1G18390 537 / 0.0 Protein kinase superfamily protein (.1.2) Lus10028494 [exp] 371 / 2e-116 AT1G66880 480 / 2e-152 Protein kinase superfamily protein (.1) Lus10009150 [exp] 352 / 3e-114 AT1G66880 365 / 1e-120 Protein kinase superfamily protein (.1) Lus10032741 [exp] 298 / 4e-90 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000741 [exp] 275 / 2e-81 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036691 [exp] 270 / 1e-80 AT1G69910 665 / 0.0 Protein kinase superfamily protein (.1) Lus10019657 [exp] 268 / 2e-79 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10014387 [exp] 257 / 8e-76 AT5G02070 493 / 8e-168 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding PF14380 [poplar] [flax] WAK_assoc Wall-associated receptor kinase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.010G120800.1 pacid=42797810 polypeptide=Potri.010G120800.1.p locus=Potri.010G120800 ID=Potri.010G120800.1.v4.1 annot-version=v4.1 ATGAACCTTAACTTCTTTTTAACACCTTTTTCTCCAATAATAAATCTCTTTATTGTCACTTTCTTTCTCCTGGCAAAGAAAGCCTCATGTACAGACCCTT ATTTCGTAGCTTGCAACCCCAAAAACTGTAGCGATGGTCAAAGCATAAGCTTCCCATTTCATATCCAAGGCATGCAACCCGACTTTTGTGGCTACCCTGG ATTCACTATCTCTTGCAACGACAAAGGCAAGCCAGTCTTTAATCTGTCCAATAATGAGTATATCATCCACGAAATCTACTACCAAAACCAGTCTCTTCGT GTCTCAAATGCAGCTGTTTTTGGCAAAAGCCCCTCCTGTACTCCTCAAATACAAAACATATCTCTAGATGATGGCAGGTTTCATAGATCTTCTAACAGTA AAGACCTCTTCTTGCTTTACAATTGCAACTCAACGCTGCTATCAAACAACAGTGAGCTTTTAAATTACAAGGTTGATTGTCATGGGGAGAATGAAACTGT TCGGACTCTAGCAATGCTCGAAGATGATCCTTTATTGGGCTCTACTTTAGACAAATGTAGAACTCGAGTTTTGGCACCTGTGGATGTGTATAGAGGTGAG AATGTTGGGACTGAAGGGATGCTATTGCTAGAAAGAGGGTTCGTGTTGAATTGGACAGCAAGTGATTGTAGCATTTGTGAAGAGAGTGGTGGCAAGTGTG GATTTGACACCGCCACGTACCATTTCCAATGTTTCTGCCCTGACAGACCTCATGCTAAGCGGTGTTATTCCGAAAAACCCAAGCTGGGATTGAAGCTAGG ATTAGGTTTTGGCATCGGATGTCTGTTCATGGGAATAATTTTGTTGTCCTACATTTACCTGCGCCGCTTCAAGAAAAGACGTGATTCCTCAAACTTGTTA TCTATGAATTCTTCATCTGATCCCTCCTCAAAAGCAGACCTAGAAGGAGACGGTGTTTACCTCAGCATCCCCATCTTCTCTTATACTGAACTTGGGCAAG CCACCAATAATTTTGATAGTGAAAAGGAAGTTGGAGATGGAGGTTTTGGAACTGTTTACTATGGGAAGCTCCAAGATGGACGGGAAGTTGCAGTTAAGCG CCTATATGAACACAACTATAAAAGGGTTAAGCAGTTCATGAATGAAATTGAAATTCTTACTCGCCTGCACCACAAAAACCTCGTCTGCCTTTATGGATGC ACTTCACGACGCAGCCGTGAGCTGCTACTTGTCTATGAATACATTCCCAATGGCACTGTTGCTGATCATCTACATGGAGATCAAGCAAAGTCCAGTCCAC TGACCTGGCCTATTCGAATGAGCATAGCAATAGAAACAGCTAGTGCTCTGGCTTACCTTCATGCTTCTGACATCATACATCGTGATGTCAAGACGAACAA CATCCTCCTTGACAACAATTTCAGCGTGAAAGTTGCAGATTTTGGGCTTTCCAGGTTGTTTCCCAAAGACGTTACTCACGTCTCGACTGTTCCACAAGGG ACTCCAGGCTATGTTGACCCTGAATATCACCAAAGTTACCAACTTACAGATAAGAGCGATGTCTATAGCTTTGGGGTTGTCTTGATTGAGCTCATATCAT CAATGCCTGCTGTTGATATAACCAGGCACCGGCATGAGATTAATCTTTCTAACTTAGCAATAAGCAAGATTCAGAAATGTGCATTTGATGAGTTGATTGA TTCACGTCTTGGGTATAATTCAGACGAGGAAGTTAAAAGAATGACAACATCAGTTGCAGAGTTGGCTTTTCAATGTTTGCAGCAAGACAAGGAAACAAGA CCTTCCATGGAAAATGTCTTGCAGCAGTTAAAAATAATTCAAGGCGGGGAGTCCATGGAGAATCTTTCTAACTTAGCGATAACCAAGATTCAGAAATGTG CAGTTGACGAGCTGATTGATTCACGTCTTGGGTATAATTCAGACGAGGAAGTTAAAAGAATGACAACACCGGTTGCAGAGTTGGCTTTTCAATGTTTGCA GCAAGACAAGGAAACAAGACCTTCCATGGAAAATGTTTTGCAGCAGTTAAAAATAATTCAAGGCGGGGAGTCCTCGGAGAATCTTGAAGAAGTCCATGAC GATAACAAGAAGTCGAAGAACACTCTGCCACCACCTTCACCACCCTATTGCGACGAGGCTGGTCTATTGAAGAACATCCGTCTGCCACCTTCACCAGTTT CTGTTACCGCTAAATGGGCCAGTAGTAATTCTACTACACCTAATGAAAGCGTTTAA
AA sequence Show only first row Show all	>Potri.010G120800.1 pacid=42797810 polypeptide=Potri.010G120800.1.p locus=Potri.010G120800 ID=Potri.010G120800.1.v4.1 annot-version=v4.1 MNLNFFLTPFSPIINLFIVTFFLLAKKASCTDPYFVACNPKNCSDGQSISFPFHIQGMQPDFCGYPGFTISCNDKGKPVFNLSNNEYIIHEIYYQNQSLR VSNAAVFGKSPSCTPQIQNISLDDGRFHRSSNSKDLFLLYNCNSTLLSNNSELLNYKVDCHGENETVRTLAMLEDDPLLGSTLDKCRTRVLAPVDVYRGE NVGTEGMLLLERGFVLNWTASDCSICEESGGKCGFDTATYHFQCFCPDRPHAKRCYSEKPKLGLKLGLGFGIGCLFMGIILLSYIYLRRFKKRRDSSNLL SMNSSSDPSSKADLEGDGVYLSIPIFSYTELGQATNNFDSEKEVGDGGFGTVYYGKLQDGREVAVKRLYEHNYKRVKQFMNEIEILTRLHHKNLVCLYGC TSRRSRELLLVYEYIPNGTVADHLHGDQAKSSPLTWPIRMSIAIETASALAYLHASDIIHRDVKTNNILLDNNFSVKVADFGLSRLFPKDVTHVSTVPQG TPGYVDPEYHQSYQLTDKSDVYSFGVVLIELISSMPAVDITRHRHEINLSNLAISKIQKCAFDELIDSRLGYNSDEEVKRMTTSVAELAFQCLQQDKETR PSMENVLQQLKIIQGGESMENLSNLAITKIQKCAVDELIDSRLGYNSDEEVKRMTTPVAELAFQCLQQDKETRPSMENVLQQLKIIQGGESSENLEEVHD DNKKSKNTLPPPSPPYCDEAGLLKNIRLPPSPVSVTAKWASSNSTTPNESV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18390			Protein kinase superfamily pro...		Potri.010G120800 [exp]	0	1
AT5G38260			Protein kinase superfamily pro...		Potri.010G120950 [exp]	1.00	0.9479
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Potri.006G267700 [exp]	11.22	0.8609	Pt-COL1.1
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.014G060500 [exp]	13.74	0.8409
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Potri.002G154700 [exp]	14.28	0.8806	Pt-ANL2.1
AT2G19130			S-locus lectin protein kinase ...		Potri.013G121550 [exp]	14.28	0.8047
					Potri.014G048100 [exp]	15.49	0.8447
AT2G31955		CNX2	cofactor of nitrate reductase ...		Potri.009G024100 [exp]	15.87	0.8463	CNX2.1
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G036600 [exp]	19.23	0.8496
AT3G47570			Leucine-rich repeat protein ki...		Potri.015G037400 [exp]	20.12	0.8459
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.002G144700 [exp]	20.12	0.8528

Compare expression of checked genes

Potri.010G120800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.