Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25390 524 / 1e-179 Protein kinase superfamily protein (.1) AT1G18390 412 / 5e-136 Protein kinase superfamily protein (.1.2) AT5G38210 405 / 1e-132 Protein kinase family protein (.1) AT1G66880 414 / 4e-130 Protein kinase superfamily protein (.1) AT2G23450 300 / 6e-92 Protein kinase superfamily protein (.1.2) AT5G66790 270 / 9e-82 Protein kinase superfamily protein (.1) AT1G69910 263 / 5e-79 Protein kinase superfamily protein (.1) AT3G53840 244 / 8e-72 Protein kinase superfamily protein (.1) AT5G02070 241 / 1e-70 Protein kinase family protein (.1) AT1G69730 241 / 2e-69 Wall-associated kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G120800 [exp] 507 / 2e-171 AT1G18390 525 / 2e-178 Protein kinase superfamily protein (.1.2) Potri.010G121350 [exp] 493 / 8e-168 AT5G38260 364 / 5e-118 Protein kinase superfamily protein (.1) Potri.015G044750 [exp] 476 / 2e-160 AT1G18390 532 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G054725 [exp] 473 / 2e-159 AT1G18390 516 / 2e-176 Protein kinase superfamily protein (.1.2) Potri.015G045101 [exp] 471 / 9e-159 AT1G18390 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.017G118250 [exp] 471 / 6e-158 AT5G38210 542 / 0.0 Protein kinase family protein (.1) Potri.017G118100 [exp] 468 / 8e-157 AT5G38210 575 / 0.0 Protein kinase family protein (.1) Potri.004G096550 [exp] 464 / 2e-155 AT5G38210 594 / 0.0 Protein kinase family protein (.1) Potri.004G096900 [exp] 461 / 6e-154 AT5G38210 557 / 0.0 Protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022432 [exp] 494 / 5e-167 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016737 [exp] 488 / 7e-165 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10029132 [exp] 473 / 1e-159 AT1G18390 537 / 0.0 Protein kinase superfamily protein (.1.2) Lus10028494 [exp] 367 / 3e-116 AT1G66880 480 / 2e-152 Protein kinase superfamily protein (.1) Lus10009150 [exp] 353 / 3e-116 AT1G66880 365 / 1e-120 Protein kinase superfamily protein (.1) Lus10032741 [exp] 292 / 7e-89 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000741 [exp] 287 / 4e-87 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019657 [exp] 278 / 2e-84 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036691 [exp] 266 / 3e-80 AT1G69910 665 / 0.0 Protein kinase superfamily protein (.1) Lus10014387 [exp] 254 / 1e-75 AT5G02070 493 / 8e-168 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.010G121100.1 pacid=42799062 polypeptide=Potri.010G121100.1.p locus=Potri.010G121100 ID=Potri.010G121100.1.v4.1 annot-version=v4.1 ATGGCTCCCGTCCCTTTTCTAGTTTTCTTTGCCCTCTTTAACCCTTTGCTTCTTTGCGCTTCCACAGAAGATGGCTCGGCCTTCAAGAAGTGTCTGCCTT TCAATTGTGGAAAGCTCGGAGAAATCTGGTTCCCATTTACCAAAAACACAAGTCCTGAGATGTGCGGTCCCTGTGTGGTGGATGGTTGTAACGAAAATTC TCAAAGGATCCAACTTGTAAGGGGAGGAAAATGGTTTGAACTTCACAACATCTCTCAGGCTGGTCTCATTTCAATCACTGATGAAGAATTACGGGGACAT TTGAATTCCAATTCATGCGATTCCTTCAACAATTTGAGTCTTCCACCAAGTCTCCCATACTTATCTATTCAAGAATTCTCCAACCTAACTTTATTCAAAT GTGACCTCAGTGTCAATTTTCCTCACCATCTTGAATTTAACTATATAGGATGCAAGAACTTCAGCATCTATTATAATCGCAACACCAGTCTACCTAGTCC TCCACCTACCTGTTCAATTCTTCAGCTCCCAGTGAATAAAGCCGAGAGTTATGATGACATATTCAGGCAGTTAACAGCTACCTTCTCTATTGAAGTTTTC GTATTCCCTCCCTGTCATCATTGTTATTTGCAAGGAGGGGCATGTCAAATCATCGAAGGAAAGCCCAAATGCATCCATTCAATTGAAGAGAGAGAAAAAT TGATATTGAAGCTCGGACTAGGTCTCGGAGTCCCTTTCATGGTATTAATAATTTTGGTGTCCGTATTTTTCATCCGGTGGCATCGACACAAGAGAAAACA CATTTCCTCTAACGTCAATTCAGCAAATGCTTCTTCAGATCCCTCATCAAAATCAGACCCGGAAGGGGACAGTAACTACTTTGGGGTCCCCATCTTCTCC TATTCTGAACTTGAAGAAGCCACAAACAACTTCGATTCCAAACACGAACTTGGTGACGGAGGTTTTGGAACTGTATATTACGGCAAACTCCGAGATGGGC GGGAAGTTGCAGTCAAGCGCCTATATGAACACAATCGTAAGAGGATAAAGCAGTTCATGAATGAAATTCAAATCCTTACTCGCCTGCGCCACAAAAATCT TGTGTCTCTTTATGGGTGTACTTCTTGCTACAGCCGCGAGCTCCTCCTTGTCTATGAATACATTCCCAATGGCACAGTTGCAGATCATCTCCATCATGAT CGAGCCAAATCTGGTTCACTAACTTGGACTATTCGAATGAGGATAGCCATAGAAACGGCTGGCGCATTGGCTTATCTGCATGCTACTGATATCATTCACC GGGATGTAAAAACGAACAATATACTTCTTGACAACAATTTCTGTGTGAAAGTTGCAGATTTTGGGCTTTCCAGGTTGTTCCCCAACGATGTCACTCACAT CTCAACTGCTCCACAGGGAACACCTGGCTATCTTGACCCAGAATACCATCAGTGTTACCAGTTGACAGCTAAGAGTGATGTCTATAGCTTTGGTGTTGTC CTCATTGAGCTCATATCATCAATGCCTGCTGTTGATATGACTAGGAATCAGCATGAGATAAATTTGGCCACATTAGCAATGAACAAGATTCAAAAATGTG CATTTGATGAGTTGATTGACCCATATCTTGGGTACAAGTCAGATGAGGAAATTAAAAGAATGACAACTTCAGTTGCAGAGTTGGCTTTTTTATGCTTGCA GCAGGGCAAGGAAATCAGACCTGGTATGAATGAGGTGCTAAAGGAACTAAAAGCAATGGAGAGTGGGGGGTATGAGTTGGAGAATCTGGAACAGGAGCAT GGTGATAACGATGCATCAAAGAAAAAAGAACCTCCGGATTGTGATGTGGTTGCATTGCTAAAGCATATCCGGTCACCGCTGTCATCGAATTCCACAACTG ATCAGTGGTTTAGCAGTTCTACTACACCTAATGTCAGCAATTAA
AA sequence Show only first row Show all	>Potri.010G121100.1 pacid=42799062 polypeptide=Potri.010G121100.1.p locus=Potri.010G121100 ID=Potri.010G121100.1.v4.1 annot-version=v4.1 MAPVPFLVFFALFNPLLLCASTEDGSAFKKCLPFNCGKLGEIWFPFTKNTSPEMCGPCVVDGCNENSQRIQLVRGGKWFELHNISQAGLISITDEELRGH LNSNSCDSFNNLSLPPSLPYLSIQEFSNLTLFKCDLSVNFPHHLEFNYIGCKNFSIYYNRNTSLPSPPPTCSILQLPVNKAESYDDIFRQLTATFSIEVF VFPPCHHCYLQGGACQIIEGKPKCIHSIEEREKLILKLGLGLGVPFMVLIILVSVFFIRWHRHKRKHISSNVNSANASSDPSSKSDPEGDSNYFGVPIFS YSELEEATNNFDSKHELGDGGFGTVYYGKLRDGREVAVKRLYEHNRKRIKQFMNEIQILTRLRHKNLVSLYGCTSCYSRELLLVYEYIPNGTVADHLHHD RAKSGSLTWTIRMRIAIETAGALAYLHATDIIHRDVKTNNILLDNNFCVKVADFGLSRLFPNDVTHISTAPQGTPGYLDPEYHQCYQLTAKSDVYSFGVV LIELISSMPAVDMTRNQHEINLATLAMNKIQKCAFDELIDPYLGYKSDEEIKRMTTSVAELAFLCLQQGKEIRPGMNEVLKELKAMESGGYELENLEQEH GDNDASKKKEPPDCDVVALLKHIRSPLSSNSTTDQWFSSSTTPNVSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25390			Protein kinase superfamily pro...		Potri.010G121100 [exp]	0	1
AT1G25390			Protein kinase superfamily pro...		Potri.010G121025 [exp]	2.00	0.9897
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Potri.004G181900 [exp]	3.00	0.9728
AT1G25390			Protein kinase superfamily pro...		Potri.010G121400 [exp]	3.16	0.9674
AT1G18980			RmlC-like cupins superfamily p...		Potri.015G068200 [exp]	5.65	0.9512
AT5G38210			Protein kinase family protein ...		Potri.004G097100 [exp]	6.48	0.9607
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.016G126900 [exp]	6.92	0.9680
AT5G38260			Protein kinase superfamily pro...		Potri.004G097000 [exp]	8.48	0.9552
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Potri.015G040400 [exp]	8.71	0.9479
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Potri.003G023000 [exp]	8.77	0.9145
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027501 [exp]	9.79	0.9403

Compare expression of checked genes

Potri.010G121100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.