Plant FIBer expression Database

Potri.010G121400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G25390 47 / 2e-06 Protein kinase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G121100
[exp]
217 / 4e-67 AT1G25390 524 / 1e-179 Protein kinase superfamily protein (.1)
Potri.010G121350
[exp]
185 / 1e-55 AT5G38260 364 / 5e-118 Protein kinase superfamily protein (.1)
Potri.010G121025
[exp]
170 / 1e-53 AT1G25390 73 / 7e-15 Protein kinase superfamily protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G121400.2 pacid=42800186 polypeptide=Potri.010G121400.2.p locus=Potri.010G121400 ID=Potri.010G121400.2.v4.1 annot-version=v4.1
ATGGCTCCCGTCCCTTTGCTAGTTTTCTTTGCCCTCTTCAACCCTTTGCTTGTTTGCGCTTCCAAAGATGGCTTGGCCTTCAATAGGCGTCTGCCTTTCA
ATTGTGGAAAGCTCGGAGAAATCGGGTTCCCATTTACCAACAACACAAGTCCTGAGACATGCGGTCCCTGTGTGGTGGATGGCTGTGACGAAAAATCTCA
AAGGATCCAACTAGTAAGGGGAGGAAAATGGTTTGAACTTCACAGCATCTCTCAGGCTGGATGCAACAACTTCAGCATCTATTATACTCGCAACACCAGT
CTACCTAGTCCTCCACCTACCTGTTCAATTCTTCAGCTCCCAGTGAATAATACCGAGAGTTATGGTGACATATTCAGGCTGTTAACAGCTACCTTCTCTA
TTGAAGTGTTAGTAACGCCTTTCTGTTATCGTTGTTATTTGCAAAGAGGGGAATGTCAAATCATCGAAGGACAGAGCAAATGCATCCATTCAATTAAAGA
GAACAAAAAATTGAGATTGAAGCTCGGACTAGACATGTCAACAATTATTTTCCATTCATTGGAAAATAAAACCAGATTTCCTATTCCCCAACATTAA
AA sequence
>Potri.010G121400.2 pacid=42800186 polypeptide=Potri.010G121400.2.p locus=Potri.010G121400 ID=Potri.010G121400.2.v4.1 annot-version=v4.1
MAPVPLLVFFALFNPLLVCASKDGLAFNRRLPFNCGKLGEIGFPFTNNTSPETCGPCVVDGCDEKSQRIQLVRGGKWFELHSISQAGCNNFSIYYTRNTS
LPSPPPTCSILQLPVNNTESYGDIFRLLTATFSIEVLVTPFCYRCYLQRGECQIIEGQSKCIHSIKENKKLRLKLGLDMSTIIFHSLENKTRFPIPQH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G25390 Protein kinase superfamily pro... Potri.010G121400
[exp]
0 1
AT1G25390 Protein kinase superfamily pro... Potri.010G121100
[exp]
3.16 0.9674
AT4G21700 Protein of unknown function (D... Potri.003G087400
[exp]
3.74 0.9172
AT1G25390 Protein kinase superfamily pro... Potri.010G121025
[exp]
3.87 0.9663
AT1G18980 RmlC-like cupins superfamily p... Potri.015G068200
[exp]
3.87 0.9481
AT5G38260 Protein kinase superfamily pro... Potri.017G117010
[exp]
4.00 0.9494
AT1G07390 AtRLP1 receptor like protein 1 (.1.2.... Potri.018G144700
[exp]
6.92 0.9382
AT1G18140 LAC1, ATLAC1 laccase 1 (.1) Potri.015G040400
[exp]
7.34 0.9335
AT5G38210 Protein kinase family protein ... Potri.004G097100
[exp]
8.94 0.9342
AT1G08450 AtCRT3, PSL1, E... PRIORITY IN SWEET LIFE 1, EMS-... Potri.019G055200
[exp]
9.69 0.8860
AT3G11080 AtRLP35 receptor like protein 35 (.1) Potri.012G028101
[exp]
10.81 0.9211

Potri.010G121400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.