Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25380 395 / 2e-137 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) AT2G47490 355 / 4e-122 ATNDT1 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) AT5G66380 162 / 3e-47 ATFOLT1 folate transporter 1 (.1) AT5G46800 117 / 3e-30 BOU A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) AT3G53940 109 / 7e-27 Mitochondrial substrate carrier family protein (.1) AT4G01100 109 / 7e-27 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G48970 107 / 3e-26 Mitochondrial substrate carrier family protein (.1) AT2G39970 100 / 8e-24 PXN, PMP38, APEM3 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) AT2G37890 100 / 1e-23 Mitochondrial substrate carrier family protein (.1) AT3G55640 100 / 2e-23 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G123700 [exp] 552 / 0 AT1G25380 417 / 8e-146 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.014G125600 [exp] 370 / 7e-128 AT2G47490 448 / 1e-159 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.002G200900 [exp] 367 / 5e-127 AT2G47490 471 / 1e-168 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.007G019000 [exp] 149 / 5e-42 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.015G108900 [exp] 114 / 7e-28 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.012G110700 [exp] 113 / 1e-27 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.014G095400 [exp] 111 / 2e-27 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 108 / 1e-26 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 107 / 3e-26 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034104 [exp] 418 / 8e-147 AT1G25380 414 / 3e-145 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10001463 [exp] 347 / 6e-119 AT2G47490 415 / 1e-146 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Lus10003041 [exp] 292 / 7e-99 AT1G25380 299 / 6e-102 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10028339 [exp] 118 / 9e-31 AT5G66380 384 / 2e-135 folate transporter 1 (.1) Lus10032365 [exp] 114 / 2e-28 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 113 / 3e-28 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 110 / 3e-27 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10043022 [exp] 110 / 2e-26 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10032522 [exp] 109 / 2e-26 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10032364 [exp] 107 / 3e-26 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.010G121500.4 pacid=42797295 polypeptide=Potri.010G121500.4.p locus=Potri.010G121500 ID=Potri.010G121500.4.v4.1 annot-version=v4.1 ATGACTGGAGGTGGGGAAGCTTCCCATAAGCGAAGCCCCAGGGAGTTAGCATGCCATGCTGGTGCTGGTGCCTCCGCAGGTGTTATTGCAGCCACGTTTA TGTGCCCATTGGATGTGATCAAGACAAGGTTACAAGTCCATGGCTTGCCTCCCAATTCAGGTCAAGGAGGTAGTATCATCATCTCAAGTCTTAAACACAT TGTCAGAACTGAAGGTTTTAAGGGATTGTATCGTGGGCTCTCTCCAACAATAATGGCACTTCTTCCGAACTGGGCTGTGTATTTCACAGTTTATGAGCAA CTTAAAGGCATCCTTTCAAATGAGGATGGGGATAGCCATCTCTCAGTTGGTGCAAACATGGTAGCTGCTGCTGGTGCTGGGGCTGCAACATCCATTGCAA CAAATCCATTGTGGGTTGTGAAAACCAGACTCCAGACGCAAGGAATGAGGCCAGGTGTGGTTCCTTACAAAAGCGTACTTTCTGCTTTGAGGCGGATTAA ACAAGAGGAAGGCATGCTAGGCTTGTATAGTGGGATTTTGCCTTCTTTGGCTGGGATAAGTCATGTTGCAATTCAATTTCCAGCATATGAAAAGATCAAG TGTTACATGGCAAAGAAGGGTAATACAACTGTTAATAATTTAAGCCCTGGGGATGTCGCAATTGCCTCTTCAGTATCCAAAGTACTTGCCTCTGTACTGA CTTATCCACATGAGGTGGTGCGTTCAAGACTTCAAGAGCAAGGGCAGCTCAGAAATTCTGAGGCCCATTATGCCGGTGTTGTTGATTGCATTAAGAAAGT GTTCCAAAAGGAAGGTTTCCGTGGATTTTACCGTGGCTGTGCAACTAACTTAATGAGAACGACTCCATCTGCTGTGATTACATTTACCAGTTATGAGATG ATACACAAGTTCTTCGAGGGCATTCTGCTTCCTGACAAGAAGCATTCACATGCCCAGACTAAATCCGATGACCATGCCAAACCTCAGCAGGAGATCAAAG GAAATGTTAATAGTAACAACACCGTTTCGGGGCAATCACAAACCCAACCAAATAAGACTCCCTCTATTCCTTTGGGAAACAAAGAGCAGCTACCTGCTGC GCACTGA
AA sequence Show only first row Show all	>Potri.010G121500.4 pacid=42797295 polypeptide=Potri.010G121500.4.p locus=Potri.010G121500 ID=Potri.010G121500.4.v4.1 annot-version=v4.1 MTGGGEASHKRSPRELACHAGAGASAGVIAATFMCPLDVIKTRLQVHGLPPNSGQGGSIIISSLKHIVRTEGFKGLYRGLSPTIMALLPNWAVYFTVYEQ LKGILSNEDGDSHLSVGANMVAAAGAGAATSIATNPLWVVKTRLQTQGMRPGVVPYKSVLSALRRIKQEEGMLGLYSGILPSLAGISHVAIQFPAYEKIK CYMAKKGNTTVNNLSPGDVAIASSVSKVLASVLTYPHEVVRSRLQEQGQLRNSEAHYAGVVDCIKKVFQKEGFRGFYRGCATNLMRTTPSAVITFTSYEM IHKFFEGILLPDKKHSHAQTKSDDHAKPQQEIKGNVNSNNTVSGQSQTQPNKTPSIPLGNKEQLPAAH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25380		ATNDT2	NAD+ transporter 2, ARABIDOPSI...		Potri.010G121500 [exp]	0	1
AT1G18490			Protein of unknown function (D...		Potri.012G057400 [exp]	3.16	0.6917
AT1G18720			Protein of unknown function (D...		Potri.010G166500 [exp]	7.28	0.7153
AT5G47540			Mo25 family protein (.1)		Potri.010G155400 [exp]	13.74	0.6803
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Potri.004G100700 [exp]	14.42	0.6726
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.001G013800 [exp]	15.29	0.6987
AT3G05920			Heavy metal transport/detoxifi...		Potri.002G032800 [exp]	17.86	0.6515
AT4G14385			unknown protein		Potri.005G223900 [exp]	21.90	0.6962
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Potri.017G044700 [exp]	25.74	0.6473
AT3G48330		ATPIMT1, PIMT1	Arabidopsis thaliana protein-l...		Potri.015G086600 [exp]	30.33	0.6320
AT5G14680			Adenine nucleotide alpha hydro...		Potri.017G071700 [exp]	36.24	0.6807

Compare expression of checked genes

Potri.010G121500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.