Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68400 760 / 0 leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G36570 427 / 6e-141 Leucine-rich repeat protein kinase family protein (.1) AT5G05160 378 / 3e-122 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT4G23740 374 / 1e-120 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 372 / 5e-120 RLK902 receptor-like kinase 902 (.1) AT2G26730 349 / 7e-111 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 334 / 3e-105 Leucine-rich repeat protein kinase family protein (.1.2) AT3G08680 322 / 1e-100 Leucine-rich repeat protein kinase family protein (.1.2) AT1G48480 317 / 7e-99 RKL1 receptor-like kinase 1 (.1) AT1G60630 308 / 3e-95 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G117200 [exp] 447 / 2e-148 AT2G36570 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 435 / 3e-144 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 421 / 7e-139 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 405 / 3e-132 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G095200 [exp] 369 / 7e-119 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G228400 [exp] 358 / 1e-114 AT1G68400 357 / 3e-114 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.016G139200 [exp] 355 / 1e-113 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 351 / 9e-112 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 333 / 4e-105 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035138 [exp] 692 / 0 AT1G68400 746 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10031965 [exp] 560 / 0 AT1G68400 614 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10019113 [exp] 425 / 3e-140 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 414 / 3e-136 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017178 [exp] 396 / 2e-128 AT2G36570 872 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021131 [exp] 387 / 4e-125 AT2G36570 851 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027568 [exp] 363 / 7e-117 AT4G23740 652 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10039321 [exp] 360 / 2e-115 AT4G23740 649 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002299 [exp] 342 / 2e-112 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1) Lus10021673 [exp] 352 / 3e-112 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G121700.1 pacid=42796912 polypeptide=Potri.010G121700.1.p locus=Potri.010G121700 ID=Potri.010G121700.1.v4.1 annot-version=v4.1 ATGGCACTAGCAAAACCCATTTTTCTATTTCCATACATGACAACTTTCTTCTTAATATCTCTTCATTTCTCTCTTCTCCAAGCTTCTTCCAACCCAGATT CAGAACCTCTTCTGCAATTCAAAACCTTGTCAGACACAGATAACAAGCTCCAAGACTGGAACTCCAGCACCAACCCATGTACCTGGACGGGCATTGCTTG TCTCAACGACCGAGTCTCTCGTCTTGTCCTCGAAAACCTTAACCTTCAAGGCAGCTCTTTGCAGACCTTAACCTCTCTCACTCAGCTTCGAGTCTTAAGC CTCAAAAGAAACAATCTTTCAGGTCCCATACCTCAAAACATATCTAACCTCAGTGCGTTAAAGCTTCTCTTTTTATCTCACAATCACTTCTCTGGTACCT TCCCTGTTTCTGTCCCCTCTCTTTCTAGACTTTACCGTTTGGATCTGTCTCACAACAACTTCTCCGGTAACATTCCGGTGATTGTCAACCGTTTGACTCA TCTGTTGACTTTAAGGCTTGAAGAGAATCAGTTTACTGGGTCCATTTCTAGCTTGAATTTACCAAGCTTGCAAGACTTTAACGTTTCTAATAACCGGGTA TCCGGTGAAATACCCAAATCTTTATCGGGTTTCCCTGAATCCGCTTTCGCTCAAAGCCTCCCTGCTGGTCTTTGTGGATCCCCGTTACAGGCTTGTAAAA GTTTAGCTTCCGACCCGACAAGACCCGGATCCGATGGGGCTATAGCGTCTCCATTGTTGCCTGGAACTAACCCAACAAGCATAGTTTCTTCAACACCAAG CTCAGTAGTAGCACCAAACAAACCAACAAACACTAACCACAAAATCAGCAAAACATCAACCAAAATAAGCCCATTAGCCCTAATAGCCATTATATTAGGG GATATTTTAATTCTTGCCGTGGTTTCTCTCCTTCTCTACTGTTACTTCTGGCGCAACTACGCAGCCAAAATGCGAAATGGGAAGGGCTCAAAGCTGTTAG AAACCGAGAAGATTGTTTACTCTTCGAGCCCTTACCCGAACCAGCCGGGCTTTGAGAGGGGAAGGATGGTGTTCTTTGAAGGGGTGGAAAGGTTTGAGCT TGAAGATTTACTTAGAGCTTCAGCAGAGATGTTAGGGAAAGGCGGGTTTGGAACCGCATACAAAGCAGTCCTTGATGATGGGAATGTGGTGGCAGTGAAA AGGCTTAAGGATGCTAATGTTGGAGGGAAAAGAGAGTTGGAGCAACATATGGAGGTTTTAGGGAGATTAAGACATCCTAATTTGGTTAGTTTTAAGTCTT ATTACTTCGCTAGAGAAGAGAAGTTGCTGGTCTATGATTACATGCCAAATGGGAGCTTGTTTTGGCTTCTTCATGGTAACAGAGGACCAGGAAGAACCCC ACTGGACTGGACTACTAGGCTAAAAATAGCAGCTGGAGCAGCCCGTGGGTTAGCATTTATGCACAACTCATGCAAAGCTCTTAAACTCGTCCATGGTAAC ATCAAATCCACAAACATCCTTTTAGACAAGGCAGGCAATGCCCGTGTCTCAGATTTTGGGCTCACTCTCTTTGCATCTTCTACTAATTCTGCCCCAAGAT CCAATGGCTACCGCGCTCCCGAAGCAACATCTGACGGTCGAAAACAGACCCAAAAATCTGACGTGTACTCCTTTGGGGTTTTGCTATTGGAGATTTTAAC AGGGAAATGCCCTTCTATAGTGGATTGTGGTGCTGGGCCTGGAAATGGGTATGGTGGGCCTGTGGACTTGCCAAGGTGGGTCCAATCTGTGGTGAGGGAG GAGTGGACGGCTGAGGTGTTTGATTTGGAGCTGATGAGGTATAAGGATATTGAGGAGGAGATGGTGGGCCTACTTCAAATTGCATTGGCTTGTACAACTC CATCTCCTGATCATCGGCCTAGGATGGGCCACGTGGTTAGGATGATTGAGGAGATACGCGGGGTCGAAATGTCTCCATGTCACGACACCTTTGACTCTGT CTCTGATTCTCCTTGCTTGTCCGAAGAGACTAGTGGAGCTGGCCAGTGA
AA sequence Show only first row Show all	>Potri.010G121700.1 pacid=42796912 polypeptide=Potri.010G121700.1.p locus=Potri.010G121700 ID=Potri.010G121700.1.v4.1 annot-version=v4.1 MALAKPIFLFPYMTTFFLISLHFSLLQASSNPDSEPLLQFKTLSDTDNKLQDWNSSTNPCTWTGIACLNDRVSRLVLENLNLQGSSLQTLTSLTQLRVLS LKRNNLSGPIPQNISNLSALKLLFLSHNHFSGTFPVSVPSLSRLYRLDLSHNNFSGNIPVIVNRLTHLLTLRLEENQFTGSISSLNLPSLQDFNVSNNRV SGEIPKSLSGFPESAFAQSLPAGLCGSPLQACKSLASDPTRPGSDGAIASPLLPGTNPTSIVSSTPSSVVAPNKPTNTNHKISKTSTKISPLALIAIILG DILILAVVSLLLYCYFWRNYAAKMRNGKGSKLLETEKIVYSSSPYPNQPGFERGRMVFFEGVERFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVK RLKDANVGGKRELEQHMEVLGRLRHPNLVSFKSYYFAREEKLLVYDYMPNGSLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGLAFMHNSCKALKLVHGN IKSTNILLDKAGNARVSDFGLTLFASSTNSAPRSNGYRAPEATSDGRKQTQKSDVYSFGVLLLEILTGKCPSIVDCGAGPGNGYGGPVDLPRWVQSVVRE EWTAEVFDLELMRYKDIEEEMVGLLQIALACTTPSPDHRPRMGHVVRMIEEIRGVEMSPCHDTFDSVSDSPCLSEETSGAGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68400			leucine-rich repeat transmembr...		Potri.010G121700 [exp]	0	1
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Potri.007G108301 [exp]	2.00	0.9199
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Potri.019G015768 [exp]	2.23	0.8951
AT5G45800		MEE62	maternal effect embryo arrest ...		Potri.011G067900 [exp]	5.09	0.9235
AT3G13000			Protein of unknown function, D...		Potri.007G003900 [exp]	7.21	0.8499
AT1G28220		ATPUP3	purine permease 3 (.1)		Potri.002G099600 [exp]	8.48	0.8678
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Potri.005G097800 [exp]	11.74	0.8235
AT5G45470			Protein of unknown function (D...		Potri.015G113400 [exp]	13.67	0.8754
AT1G17620			Late embryogenesis abundant (L...		Potri.001G200700 [exp]	14.24	0.8889
AT3G05858			unknown protein		Potri.010G003900 [exp]	18.22	0.9055
AT5G57390	AP2_ERF	PLT5, EMK, CHO1...	PLETHORA 5, EMBRYOMAKER, CHOTT...		Potri.006G167700 [exp]	19.39	0.8506

Compare expression of checked genes

Potri.010G121700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.