Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68380 337 / 2e-113 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 335 / 5e-113 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 333 / 7e-112 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G25970 328 / 2e-110 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 328 / 9e-110 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10280 322 / 2e-107 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 317 / 4e-106 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G16170 280 / 5e-91 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10880 286 / 2e-90 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G045400 [exp] 446 / 1e-156 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G123500 [exp] 427 / 2e-150 AT1G68380 254 / 1e-82 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 355 / 1e-120 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 350 / 2e-118 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 345 / 9e-117 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 342 / 9e-116 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 337 / 7e-114 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 332 / 6e-112 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 330 / 4e-111 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034349 [exp] 428 / 9e-148 AT1G68390 387 / 3e-131 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10031958 [exp] 403 / 1e-138 AT1G68390 403 / 2e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035828 [exp] 394 / 2e-135 AT1G68390 401 / 7e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036610 [exp] 390 / 5e-134 AT1G68390 404 / 3e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035145 [exp] 370 / 8e-128 AT1G68390 393 / 6e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002989 [exp] 325 / 8e-109 AT1G10280 525 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 324 / 2e-108 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 324 / 2e-108 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10024468 [exp] 323 / 3e-108 AT1G10280 524 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10007457 [exp] 324 / 4e-106 AT5G11730 489 / 1e-170 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02485 [poplar] [flax] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Potri.010G121800.1 pacid=42798005 polypeptide=Potri.010G121800.1.p locus=Potri.010G121800 ID=Potri.010G121800.1.v4.1 annot-version=v4.1 ATGAAGGGTCAAACTCAAAACCAGAATCTGGTCACTGCATTTACAAAGCTGTTCAATGCCCAGTTGCAACTCATCAATGTCCTTTCTCTCTTCTTTTTAT TTGGCTGTGGTCTTGCCACCGGAGTCATTCTTAGTTCCTATCTCAACAACATATCATTCAATCTACAAGTCAGTCATTTCTCTTTTTCTACCACTACCAC AACAGCATCGCCAACATTCAAGCTGCCTCCTCGCGTAGGCTTGAAAGAATATCTGAAGGTGCCTGATGTTAAGCATGATATGGATGAAAAGGAATTGCTG TGGAGAGCTTCCGTGACTCCAAACATACGTGAGTTTCCATTTGATAGAGTTCCGAAGGTTGCTTTTATGTTTTTGACAAAGGGGCCAGTTTTGATGGCTC CACTGTGGGAGAAATTCTTCAAGGGGCATGATGGGTTGTACTCAATTTATGTGCATTCAAGTCCATCTTACAATGAATCAGAGCCCGAAAGTCCTGTGTT TCATGGCAGAAGAATTCCCAGCAAGGTTGTTCAATGGGGAAATGCAAACATGATTGAAGCTGAAAGACGACTATTAGCCAATGCACTCCTTGACATTGCT AACCAACGTTTTGTTCTCCTCTCGGAATCATGCATTCCACTCTTTAACTTCTCCACTGTCTACACTTACCTAATGAACTCAACCAAAAGTCACGTGGAGT CCTATGTCTTAGAAGGTCCAGTAGGTAATGGCCGATATAGTCCACGGATGAGACCTGGGATCAAAATCGACCAATGGAGGAAAGGCTCACAGTGGTTCGA AATAGATCGAGACCTTGCCATTGAAATTGTCTCGGACCGAAAATATTTTCCCCTATTCCAAAAGTACTGCACGGGACAATGTTACTCTGATGAGCATTAC TTACCAACATTTGTGACTATGAAGCATTCGAAGAGGAATTCAAATAGGACTTTGACTTGGGTTGACTGGTCCAGAGGTGGGCCTCATCCTGCTAAGTTTT TAAGGACAGAGGTGACCATTGAGTTTTTGGAGAGGATGAGAAGTGGCAGCAAATGTGTGTATAATGGGAATCACACCAACACTTGTTTCTTGTTTGCAAG GAAATTCTGGCCTAATGCTCTAGATAGGCTATTGAGGTTTGCTCCCAAAATCATGCATTTCAACTCATAG
AA sequence Show only first row Show all	>Potri.010G121800.1 pacid=42798005 polypeptide=Potri.010G121800.1.p locus=Potri.010G121800 ID=Potri.010G121800.1.v4.1 annot-version=v4.1 MKGQTQNQNLVTAFTKLFNAQLQLINVLSLFFLFGCGLATGVILSSYLNNISFNLQVSHFSFSTTTTTASPTFKLPPRVGLKEYLKVPDVKHDMDEKELL WRASVTPNIREFPFDRVPKVAFMFLTKGPVLMAPLWEKFFKGHDGLYSIYVHSSPSYNESEPESPVFHGRRIPSKVVQWGNANMIEAERRLLANALLDIA NQRFVLLSESCIPLFNFSTVYTYLMNSTKSHVESYVLEGPVGNGRYSPRMRPGIKIDQWRKGSQWFEIDRDLAIEIVSDRKYFPLFQKYCTGQCYSDEHY LPTFVTMKHSKRNSNRTLTWVDWSRGGPHPAKFLRTEVTIEFLERMRSGSKCVYNGNHTNTCFLFARKFWPNALDRLLRFAPKIMHFNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68390			Core-2/I-branching beta-1,6-N-...		Potri.010G121800 [exp]	0	1
AT4G32120			Galactosyltransferase family p...		Potri.006G257200 [exp]	1.73	0.9326
AT5G11710			ENTH/VHS family protein (.1)		Potri.006G234100 [exp]	9.69	0.9305
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Potri.008G168100 [exp]	11.53	0.8633	CKI1.3
AT2G45040			Matrixin family protein (.1)		Potri.014G058200 [exp]	11.83	0.9110
AT3G59360		UTR6, ATUTR6	UDP-galactose transporter 6 (....		Potri.017G035800 [exp]	13.41	0.9150
AT5G37310			Endomembrane protein 70 protei...		Potri.017G144181 [exp]	17.83	0.9106
AT5G05010			clathrin adaptor complexes med...		Potri.012G125500 [exp]	21.49	0.9153
AT3G24040			Core-2/I-branching beta-1,6-N-...		Potri.001G053800 [exp]	22.09	0.8819
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Potri.017G106800 [exp]	24.04	0.9050
AT4G14960		TUA6	Tubulin/FtsZ family protein (....		Potri.001G289500 [exp]	24.24	0.9101	TUA2.1

Compare expression of checked genes

Potri.010G121800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.