Plant FIBer expression Database

Potri.010G122000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G25375 571 / 0 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
AT4G33540 42 / 0.0009 metallo-beta-lactamase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G122100
[exp]
796 / 0 AT1G25375 600 / 0.0 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
Potri.001G380100
[exp]
44 / 9e-05 AT1G53580 407 / 2e-144 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005109
[exp]
600 / 0 AT1G25375 533 / 0.0 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
Lus10017706
[exp]
45 / 5e-05 AT1G06130 501 / 3e-180 glyoxalase 2-4 (.1.2)
Lus10033662
[exp]
44 / 0.0001 AT2G43430 447 / 1e-159 GLYOXALASE II, glyoxalase 2-1 (.1.2)
PFAM info
Representative CDS sequence
>Potri.010G122000.6 pacid=42799307 polypeptide=Potri.010G122000.6.p locus=Potri.010G122000 ID=Potri.010G122000.6.v4.1 annot-version=v4.1
ATGGCCACTTACAACCTAGCTTTAATCCTCAAAAACCCCTCAGACGAAGCCGAATTTCTCCTTGCAAAGCAAAACCCGCCTCCAAAATTCGGCATCGAAG
AGTATGATACATTTGTTGACTCCGATCTCTGGGACTTACCCTCAACAAAGCTGGACCTTGAAGAAGGAGAATTGGAGTCTAGTAGTATTGTTATAGAAGG
CTTGGAGAGGACCGATTTGGGAAAATTCGATGTTGAATCGGCTATTAGCAAGGTTTTGGAGCAAGTGGGGTTTAAGGTAAATGATGGAGGAGAGTGGAGA
TTTTTGAAGCTTGTAGAGGAAGCTGAGTTTGGCCCAGGATTGCCAGTTCATAGAGTGTACATTGTAGGGAAATTGTTACCTGGGAATCAAAACTTACCAG
AGCTGTGTAAGTGGATGTCTATCCAAAGTTGTTTGAGCTTGCTTGTGGATGTGAAAAAAAGTAGTGATCGTGTGGGACCTTTGGTAGTTCTTGGTCTTAT
AAATGATTCGGCACAATCTTCAGAGAAAGTGAATACTGCCTTGCATTATCAGGAATATCCACCTGGTGTTATAATCGTGCCTATGAAAAGTAGAACAGCC
AAGCCTTTCCATACAACAAACTTGGTTATATTTGCACCTGAGAGTGTAAAAAATGAAAGTGAAGATTACAATTTTGTAGCCCATGGAGATGCATTGATAG
TGGACCCAGGATGTCGAGCTGATTTTCATGAGGAGCTCTTGCAAATTGTTGCTGCTCTGTCTAAAAAGTTGGTCGTCTTTGTTACCCATCACCACGGAGA
TCATGTTGATGGCCTTTCTGTGATCCAAAAATGCAATCCTAATGCAACTTTATTAGCACATGAGAACACAATGTGCCGCATTAGGAAAGATGACTGGTCG
CTTGGTCACATCTCAGTTTCTGGAGGAGAAGACATTTGCATTGGTGGTCAGAGATTGAATATCATTTTTGCTCCGGGACATACAGATGGGCATTTGGCAC
TGCTTCATGTCGAAACTCACTCGTTGATTGTAGGTGATCATTGTGTGGGCCAAGGAAGTGCCCTCCTGGACGTTGCTTCTGGTGGAAATATGGCCGATTA
CTTCCGATCTACTTACAAATTTATTGAGCTTGCCCCACATGTCTTGATCCCAATGCATGGAAGAGTTAATTTGTGGCCAAAGCACATGCTTTGCGGATAT
CTAAAGAACCGTAGAAGTAGAGAATTATCCATCTTGGAAGCTATAGAAAATGGAGCTAAGACATTATTCGACATAGTTGCCGATGTATATTCGGGGGTTG
ATCGCAGTCTTTGGTACCATGCTGCATCAAATGTGAGACTTCATGTGGATCATTTGAATCAACAAAATAAGTTGCCGAAGGGCTTCTCTGTAGACACTTT
CAATTGCAGTTTGATTGCATTTGCTGAGAAGGTGGGTAAAATTGAGCCCAAGTGA
AA sequence
>Potri.010G122000.6 pacid=42799307 polypeptide=Potri.010G122000.6.p locus=Potri.010G122000 ID=Potri.010G122000.6.v4.1 annot-version=v4.1
MATYNLALILKNPSDEAEFLLAKQNPPPKFGIEEYDTFVDSDLWDLPSTKLDLEEGELESSSIVIEGLERTDLGKFDVESAISKVLEQVGFKVNDGGEWR
FLKLVEEAEFGPGLPVHRVYIVGKLLPGNQNLPELCKWMSIQSCLSLLVDVKKSSDRVGPLVVLGLINDSAQSSEKVNTALHYQEYPPGVIIVPMKSRTA
KPFHTTNLVIFAPESVKNESEDYNFVAHGDALIVDPGCRADFHEELLQIVAALSKKLVVFVTHHHGDHVDGLSVIQKCNPNATLLAHENTMCRIRKDDWS
LGHISVSGGEDICIGGQRLNIIFAPGHTDGHLALLHVETHSLIVGDHCVGQGSALLDVASGGNMADYFRSTYKFIELAPHVLIPMHGRVNLWPKHMLCGY
LKNRRSRELSILEAIENGAKTLFDIVADVYSGVDRSLWYHAASNVRLHVDHLNQQNKLPKGFSVDTFNCSLIAFAEKVGKIEPK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G25375 Metallo-hydrolase/oxidoreducta... Potri.010G122000
[exp]
0 1
Potri.011G070800
[exp]
7.87 0.8563
AT4G39630 unknown protein Potri.005G082500
[exp]
19.87 0.8320
AT3G26000 Ribonuclease inhibitor (.1) Potri.008G179800
[exp]
21.90 0.8309
AT5G53560 B5#2, ATB5-A, A... ARABIDOPSIS CYTOCHROME B5 ISOF... Potri.004G157800
[exp]
25.92 0.8358
AT3G07880 SCN1 SUPERCENTIPEDE1, Immunoglobuli... Potri.002G234600
[exp]
33.77 0.8303
AT5G01700 Protein phosphatase 2C family ... Potri.006G105000
[exp]
34.98 0.8039
AT5G18590 Galactose oxidase/kelch repeat... Potri.008G214900
[exp]
38.05 0.7528
AT1G29690 CAD1 constitutively activated cell ... Potri.016G135100
[exp]
46.63 0.7611
AT2G16950 ATTRN1 transportin 1 (.1.2) Potri.009G138200
[exp]
48.06 0.8193
AT3G12150 unknown protein Potri.006G058400
[exp]
49.19 0.8119

Potri.010G122000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.