Plant FIBer expression Database

Potri.010G122100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G25375 600 / 0 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
AT4G33540 42 / 0.0008 metallo-beta-lactamase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G122000
[exp]
827 / 0 AT1G25375 572 / 0.0 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005109
[exp]
664 / 0 AT1G25375 533 / 0.0 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
Lus10017706
[exp]
45 / 8e-05 AT1G06130 501 / 3e-180 glyoxalase 2-4 (.1.2)
Lus10033662
[exp]
44 / 0.0002 AT2G43430 447 / 1e-159 GLYOXALASE II, glyoxalase 2-1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0381 Metallo-HOrase PF00753 Lactamase_B Metallo-beta-lactamase superfamily
Representative CDS sequence
>Potri.010G122100.2 pacid=42797470 polypeptide=Potri.010G122100.2.p locus=Potri.010G122100 ID=Potri.010G122100.2.v4.1 annot-version=v4.1
ATGGCAACCTACAATCTCGCTTTAATCCTCGGAAACCCCTTAAACGACGACGAATTCCTCCTTGCAAAGCAAACCCCACCTCCAAAATTCGGAATTGAAG
AGTATGATTCATTCGTTGACTCTGATCTCTGGGACTTACCCTCAAAGAAGCTGGACCTTGTAGAAGGAGAATTGGAGCCTGGTAGTTTTGTTATCGAAGG
CATAGAGAGGACCAGTCTGCGCAAATTTGATTTTGATTCGGCTATTAACAAGGTTTTGGAGCAAGTGGGGTTTAAGGCAAATGATGGAGGAGAGTGGAGA
TTTTTGAAGCATCTAGAGGAAGCTGAGTTTGGCCCAGGATTGCCAGTTCATACGGTGTACATTTCGGGAAAATTGTTGAACCGGAATCAGAATTTGCCAG
GGCTGTGTAAGTGGATGTCTATCCAGAGTTGTTTAAGCTGGCTTGTGGATGTAAAACCAAGTAGTGATCGCGTGGGACCCTTGGTAGTTCTTGGTCTTAT
TAATGATTCCGTGCATTCTTCAGAGAAAGTGAACACTGCCTTGGATTATCAGGAATATCCACCTGGTGTTATAATTGTGCCTATGAGAAGTAGAACAGCC
AAGCCTTTCCACACAACAAACTTGGTTGTATTTGCGCCTGAGAGTGTAAAAAATAAATGTGAGGATTACAATTTTGTAGCACACGGAGATGCATTGATAG
TGGACCCAGGATGCCGTGCTAATTTTCACAAGGAGCTCTTGAAAGTTGTTGCTCCTCTGTCGAAAAAGTTGGTCGTCTTTGTTACCCATCACCACAGGGA
TCATGTAGATGGTCTTTCTGTCATCCAAAAATGCAACCCTAATGCCACTTTATTAGCACACAAGAACTCAATGCGCCGCATTGGGAAAGGTGACTGGTCT
CTTAATCACATCTCAGTTTCTGGAGGTGAAGACATTTGCATCGGTGGTCAGAGGTTGAATATTATTTTTGCTCCGGGACATACAGATGGGCACTTGGCAC
TGCTTCATGTTGATACTCACTCGTTGATAGTAGGTGATCATTGTGTGGGTCAAGGAAGTGCCCTCTTGGACGTTACTTCTGGTGGAAATATGACTGATTA
CTTCCAATCGACTTACAAATTTATTGAGCTTGCCCCACATGTTTTGATCCCAATGCATGGAAGAGTTAATTTGTGGCCAAAGCGCATGCTTTGCGGATAT
CTAAAGAATCGTAGAAGTAGAGAATTATCCATCTTGGAAGCAATAGAAAATGGAGCAAAGACATTAATTGACATAGTTGCCAATGTATATTCAGAGGTTG
ATCGCAGTCTTTGGTTTCCTGCTTCATCAAATGTTAGGCTTCACGTGGAACATTTGGCTCAACAAAATAAGTTACCAAAGGAATTTTCGATTCAGAAGTT
CCAAAGGACTTGCGGGGTGCATTTTATATCCAGATGGATTTGGGCATATCTTGCTGCTGAATTTCTGTCACGGTCCAAGAACGTACATATACCCAAAATA
CTAATCGGTGGAGCAGTGGTCAGCTTCGCCGTGTTCTACTCCTTGAAGTACAAGTTCACCTGA
AA sequence
>Potri.010G122100.2 pacid=42797470 polypeptide=Potri.010G122100.2.p locus=Potri.010G122100 ID=Potri.010G122100.2.v4.1 annot-version=v4.1
MATYNLALILGNPLNDDEFLLAKQTPPPKFGIEEYDSFVDSDLWDLPSKKLDLVEGELEPGSFVIEGIERTSLRKFDFDSAINKVLEQVGFKANDGGEWR
FLKHLEEAEFGPGLPVHTVYISGKLLNRNQNLPGLCKWMSIQSCLSWLVDVKPSSDRVGPLVVLGLINDSVHSSEKVNTALDYQEYPPGVIIVPMRSRTA
KPFHTTNLVVFAPESVKNKCEDYNFVAHGDALIVDPGCRANFHKELLKVVAPLSKKLVVFVTHHHRDHVDGLSVIQKCNPNATLLAHKNSMRRIGKGDWS
LNHISVSGGEDICIGGQRLNIIFAPGHTDGHLALLHVDTHSLIVGDHCVGQGSALLDVTSGGNMTDYFQSTYKFIELAPHVLIPMHGRVNLWPKRMLCGY
LKNRRSRELSILEAIENGAKTLIDIVANVYSEVDRSLWFPASSNVRLHVEHLAQQNKLPKEFSIQKFQRTCGVHFISRWIWAYLAAEFLSRSKNVHIPKI
LIGGAVVSFAVFYSLKYKFT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G25375 Metallo-hydrolase/oxidoreducta... Potri.010G122100
[exp]
0 1
AT3G01680 SEOR1, SEOb Sieve-Element-Occlusion-Relate... Potri.010G050701
[exp]
4.69 0.9754
AT5G18080 SAUR24 small auxin up RNA 24, SAUR-li... Potri.009G127600
[exp]
7.21 0.9748
AT1G52820 2-oxoglutarate (2OG) and Fe(II... Potri.006G248000
[exp]
10.81 0.9751
AT3G01680 SEOR1, SEOb Sieve-Element-Occlusion-Relate... Potri.010G050501
[exp]
12.40 0.9635
AT5G46880 HD HDG5, HB-7 HOMEODOMAIN GLABROUS 5, homeob... Potri.001G137800
[exp]
18.97 0.9681
AT4G37060 AtPLAIVB, PLP5,... phospholipase A IVB, PATATIN-l... Potri.019G014401
[exp]
20.00 0.9669
AT3G21090 ABCG15 ATP-binding cassette G15, ABC-... Potri.016G056600
[exp]
21.63 0.9674
AT3G05660 AtRLP33 receptor like protein 33 (.1) Potri.011G021216
[exp]
25.61 0.9631
AT2G36430 Plant protein of unknown funct... Potri.003G181800
[exp]
26.15 0.9576
AT3G16660 Pollen Ole e 1 allergen and ex... Potri.010G012400
[exp]
27.38 0.9631

Potri.010G122100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.