Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18290 1578 / 0 BTS, EMB2454 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) AT1G74770 426 / 2e-128 zinc ion binding (.1) AT1G18910 416 / 6e-125 zinc ion binding;zinc ion binding (.1) AT3G62970 197 / 2e-56 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G25560 189 / 2e-53 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) AT5G22920 189 / 2e-53 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT5G18650 181 / 7e-51 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT2G40830 47 / 5e-05 RHC1A RING-H2 finger C1A (.1.2.3) AT3G10815 46 / 6e-05 RING/U-box superfamily protein (.1) AT3G56580 45 / 0.0002 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G123300 [exp] 2319 / 0 AT3G18290 1604 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.012G055100 [exp] 1661 / 0 AT3G18290 1641 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.015G066600 [exp] 435 / 1e-131 AT1G74770 1199 / 0.0 zinc ion binding (.1) Potri.009G005700 [exp] 189 / 3e-53 AT5G22920 437 / 8e-156 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.014G134400 [exp] 187 / 5e-53 AT3G62970 393 / 3e-139 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G205400 [exp] 185 / 2e-52 AT5G18650 466 / 2e-168 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.006G245400 [exp] 182 / 8e-51 AT5G25560 475 / 7e-171 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) Potri.006G121801 [exp] 170 / 4e-47 AT5G22920 398 / 6e-141 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.002G085800 [exp] 44 / 0.0004 AT1G60360 233 / 4e-74 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005111 [exp] 1924 / 0 AT3G18290 1592 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10034346 [exp] 1781 / 0 AT3G18290 1467 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10042190 [exp] 489 / 3e-159 AT1G18910 563 / 0.0 zinc ion binding;zinc ion binding (.1) Lus10008628 [exp] 407 / 3e-121 AT1G74770 1024 / 0.0 zinc ion binding (.1) Lus10042189 [exp] 301 / 3e-85 AT1G18910 583 / 0.0 zinc ion binding;zinc ion binding (.1) Lus10042188 [exp] 219 / 2e-65 AT1G74770 253 / 2e-78 zinc ion binding (.1) Lus10012811 [exp] 198 / 2e-56 AT5G18650 465 / 1e-167 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10008627 [exp] 193 / 9e-52 AT2G02800 475 / 6e-164 protein kinase 2B (.1.2) Lus10033969 [exp] 179 / 2e-50 AT5G18650 449 / 2e-161 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10023914 [exp] 117 / 6e-28 AT5G22920 225 / 8e-72 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01814 [poplar] [flax] Hemerythrin Hemerythrin HHE cation binding domain PF05495 [poplar] [flax] zf-CHY CHY zinc finger CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain CL0229 [poplar] [flax] PF14599 [poplar] [flax] zinc_ribbon_6 Zinc-ribbon
Representative CDS sequence Show only first row Show all	>Potri.010G122200.1 pacid=42797931 polypeptide=Potri.010G122200.1.p locus=Potri.010G122200 ID=Potri.010G122200.1.v4.1 annot-version=v4.1 ATGTCGACGCCATTTTCTGGTATAGACGGAGGGGGAGCAGGAGGAGTAGCGGTAATGGCAGGTCCAGTGAATCCAATCGATCCTTCTGCACCGTCTAAAA CTTGCCTAAAAAATTCTGCTTTGAAATCTCCAATTCTTATCTTCCTTTTCTTCCATAAAGCTATTAGGTCCGAGCTCGATGGTCTCCACCGCGCCGCCAT CGCTTTTGCCACCACTGGTGGTGATATTAAGCCGTTACTTGAGCGCTACTACCTTTTTCGCTCGATATACAAGCATCACTGCAATGCTGAGGACGAGGTT ATTTTTCCTGCTCTTGATATACGTGTGAAGAATGTGGCACGGACTTACTCCCTTGAACATGAGGGGGAGAGTGTTCTTTTCGATCAATTATTTGAGCTGC TCAATTCAAACATGCAAAATGAAGAAAGCTATCGTAGAGAGTTAGCCTCTCGTACAGGAGCCCTTCAAACATCAATTGACCAGCATATGTCAAAGGAAGA GGAACAGGTCTTTCCCTTGCTAATCGAGAAGTTTTCATTTGAAGAGCAGGCCTCATTGGCATGGCAGTTTCTGTGCAGCATTCCTGTTAATATGATGGCA GAGTTTCTTCCTTGGCTTTCTTCCTCTATATCATCTGATGAGCATCAGGATATGCACAAGTGCTTGTGTAAGATAATCCCAGAAGAGAAACTTCTTCGGC AGGTTATTTTCTCCTGGATGAAAGGGGCAAAATTGTCTGAAACGTGTAAGAGCTGTGAAGATAATTCTAAGGCCTGGTGTCAAGATTCAGGAGCGCCAAC TTTAGGGTGTCAAAGCATGAAAGGACACTGTGCATGTGAATCTTCTAGAATGGGTAAAAGGAAATATATGGAGCTAAATTGTGATGCCACCCTTTCCACT GAATTCCATCCAATAGATGAAATTCTGCTTTGGCACAATGCCATTAAAAGAGAGTTGAATGATATAACCGAGGCAGCTAGGAGCATCCAGCATTCTGGAG ATTTTTCTAATCTGTCTTCATTCAACAAGAGGCTGCAATTCATTGCTGAAGTTTGCATCTTTCACAGTATTGCCGAGGACAAAATTATATTCCCTGCTGT AGACGCTGAACTCTCTTTTGCCCAGGAGCATGCAGAAGAAGAAGTTCAGTTTGACAAGCTTAGGTGCCTGATAGAAAGTATTCAAAATGCTGGAGCCTAC ACATCCCTTACTGATTTCTATACAAAGCTGTGTTCCCAAGCTGATCAAATCATGGACAACATACAGAAACACTTCCAAAATGAGGAAGTTCAGGTTCTTC CACTTGCTCGAAAGCACTTTAGTGCCAAAAGACAGCGTGAACTTCTTTATCAAAGCTTATGTGTGATGCCCTTGAAATTGATTGAATGTGTCTTACCGTG GTTGGTGGGGTCACTTAGTGAAGAAGCAGCGAGGTCTTTTCTTCAAAATATGTACATGGCAGCTCCAGCTTCAGATTCTGCACTGGTTACACTTTTTTCT GGTTGGGCATGCAAGGGTGGTTCTAAAAATGTTTGTTTGTCTTCAAGTGCTATTGGTTGTTGTCCGGTGAGAATCTTGGCTGGGACCGAGGAAGATACTA AACAGCAGTCCTGTAAATGCAGCCCTAGGTCATCTGTTGATGAGAAGTCTTCCTTTGTCCAAGTAGATGGAGCTGATGACTGTAGAAGGCCAGGGAAATG TGGAAACTTGTTAGCTCAGGAAGACAGCAATGGTTGTCCCTCTTCAGAACCTGTTGATACCCAAAAATCATCTTGTAGCAATAAATCTTGTTGTGTCCCT GGGTTAGGAGTAAGTAGCAACAATCTAGGAATTAGTTCTCTTGCTGCAGCTAAATCTCTACGCTCATCTTTTAGTCCTTCTGCTCCTTCCCTTAACTCCA GCCTTTTTAACTGGGAAATGGACACGAGCCCCACGAATATTGGTTGCTCATCACGGCCCATTGATAACATATTTCAATTTCATAAAGCCATCCGCAAAGA CCTGGAGTATTTAGATGTTGAATCTGGAAAACTAAATGAATGCAATGAAACTTTGCTTAGGCAGTTTACAGGTAGATTTCGTCTGCTGTGGGGTTTGTAT AGAGCACATAGTAATGCAGAGGATGATATAGTATTCCCAGCATTAGAATCTAAAGAAACACTTCATAATGTTAGCCATTCTTACACTCTGGACCATAAGC AGGAGGAGAAATTATTTGAAGATATCTCATCTGCACTTTCTGAGCTCACTCAACTTCAAGACTACTTGAAGAATACAAATCATGCTGATGAATTAATTGG AAAGCATGCTAATTTGTCTGATTGTAACTATACAGTTAGACAGTATAATGAGCTTGCGACAAAGCTTCAGGGGATGTGCAAATCCATTAGAGTAACACTG GATCAACATGTTTTCCGGGAAGAACTTGAGTTGTGGCCATTATTTGACAGGCATTTTTCTGTAGAGGAGCAGGACAAAATTGTTGGTCAGATAATTGGTA CCACAGGTGCAGAGGTGCTTCAATCGATGTTGCCATGGGTAACGTCTGCTCTCACTCTGGAGGAGCAGAACAGGATGATGGACACGTGGAAGCAGGCGAC CAAAAACACAATGTTTAGTGAGTGGCTTAATGAATGGTGGGAAGGAACTTTTGCTGCAACGCCACATGCTACAACATCAGAGAGTTGTATATCACTAGGT ACTGATCTCCATGAAAGTCTGGATCAAAGTGATCATACATTTAAGCCTGGCTGGAAAGATATTTTTCGGATGAATCAAAATGAGCTTGAAGCAGAGATTA GGAAAGTTTCTAGAGATTCAACTCTTGATCCAAGAAGAAAAGCTTACCTTATTCAAAATCTTATGACCAGCCGCTGGATAGCCGCGCAGCAGAAGTCCCC TCAAGCAAGAACTGGTGACCATTCAAATGGTGGAGACTTACTTGGATGTTCTCCTTCATTTCGAGGCCCAGAGAAACAAGAATTTGGGTGTGAGCATTAC AAAAGAAATTGTAAACTACGTGCTACTTGTTGTGGCAAGTTATTTGCATGTAGGTTCTGCCATGATAAAGTCAGTGACCATTCGATGGATAGGAAGGCTA CATCTGAAATGATGTGTATGCGCTGTCTGAAAATTCAGCCGGTTGGACCAGTTTGCACGTCTATTTCCTGCGGTGGGTTCTCAATGGCGAAGTACTATTG CAGCATCTGCAAATTTTTTGACGATGAAAGGGCTGTTTATCATTGTCCTTTCTGCAATTTATGCCGTGTGGGTACTGGGCTTGGTGCTGACTTCTTTCAT TGCATGAAGTGCAATTGTTGCCTGGCAATGAAACTAGCTGACCACAAATGTCGAGAGAAAGGTCTGGAAACAAATTGCCCAATCTGCTGCGACGACATGT TCACTTCAAGTGCAAGTGTCAAAGCTCTTCCTTGCGGCCATTTCATGCATTCAACCTGTTTTCAGGCGTACACTTGTAGTCACTACATCTGCCCAATTTG CAGCAAATCTCTGGGAGACATGTCGGTTTACTTTGGTATGCTTGATGCGCTGTTGGCTTCTGAGGAGCTTCCAGAAGAGTACCGGGATCGCTGTCAGGAT ATATTGTGCAATGACTGTGACAAGAAGGGCACAGCACCGTTTCACTGGCTATACCACAAGTGTAGGTTTTGTGGATCATACAATACCAGGGTAATTAAGG TTGATTCAACTGATTCAAACTGCTCAACTTCAAACCAGTGA
AA sequence Show only first row Show all	>Potri.010G122200.1 pacid=42797931 polypeptide=Potri.010G122200.1.p locus=Potri.010G122200 ID=Potri.010G122200.1.v4.1 annot-version=v4.1 MSTPFSGIDGGGAGGVAVMAGPVNPIDPSAPSKTCLKNSALKSPILIFLFFHKAIRSELDGLHRAAIAFATTGGDIKPLLERYYLFRSIYKHHCNAEDEV IFPALDIRVKNVARTYSLEHEGESVLFDQLFELLNSNMQNEESYRRELASRTGALQTSIDQHMSKEEEQVFPLLIEKFSFEEQASLAWQFLCSIPVNMMA EFLPWLSSSISSDEHQDMHKCLCKIIPEEKLLRQVIFSWMKGAKLSETCKSCEDNSKAWCQDSGAPTLGCQSMKGHCACESSRMGKRKYMELNCDATLST EFHPIDEILLWHNAIKRELNDITEAARSIQHSGDFSNLSSFNKRLQFIAEVCIFHSIAEDKIIFPAVDAELSFAQEHAEEEVQFDKLRCLIESIQNAGAY TSLTDFYTKLCSQADQIMDNIQKHFQNEEVQVLPLARKHFSAKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEAARSFLQNMYMAAPASDSALVTLFS GWACKGGSKNVCLSSSAIGCCPVRILAGTEEDTKQQSCKCSPRSSVDEKSSFVQVDGADDCRRPGKCGNLLAQEDSNGCPSSEPVDTQKSSCSNKSCCVP GLGVSSNNLGISSLAAAKSLRSSFSPSAPSLNSSLFNWEMDTSPTNIGCSSRPIDNIFQFHKAIRKDLEYLDVESGKLNECNETLLRQFTGRFRLLWGLY RAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISSALSELTQLQDYLKNTNHADELIGKHANLSDCNYTVRQYNELATKLQGMCKSIRVTL DQHVFREELELWPLFDRHFSVEEQDKIVGQIIGTTGAEVLQSMLPWVTSALTLEEQNRMMDTWKQATKNTMFSEWLNEWWEGTFAATPHATTSESCISLG TDLHESLDQSDHTFKPGWKDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIAAQQKSPQARTGDHSNGGDLLGCSPSFRGPEKQEFGCEHY KRNCKLRATCCGKLFACRFCHDKVSDHSMDRKATSEMMCMRCLKIQPVGPVCTSISCGGFSMAKYYCSICKFFDDERAVYHCPFCNLCRVGTGLGADFFH CMKCNCCLAMKLADHKCREKGLETNCPICCDDMFTSSASVKALPCGHFMHSTCFQAYTCSHYICPICSKSLGDMSVYFGMLDALLASEELPEEYRDRCQD ILCNDCDKKGTAPFHWLYHKCRFCGSYNTRVIKVDSTDSNCSTSNQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Potri.010G122200 [exp]	0	1
AT2G36720			Acyl-CoA N-acyltransferase wit...		Potri.016G097300 [exp]	4.47	0.8608
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Potri.013G068400 [exp]	7.34	0.8330
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Potri.016G090800 [exp]	9.16	0.8060
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Potri.005G129800 [exp]	10.77	0.8328
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.001G003900 [exp]	15.19	0.8095
AT1G01880			5'-3' exonuclease family prote...		Potri.002G152801 [exp]	20.49	0.7699
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.019G021500 [exp]	22.04	0.7751
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.017G141000 [exp]	24.79	0.7995
AT1G69550			disease resistance protein (TI...		Potri.004G202683 [exp]	25.41	0.7953
AT3G14470			NB-ARC domain-containing disea...		Potri.017G015101 [exp]	26.38	0.7286

Compare expression of checked genes

Potri.010G122200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.