Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68370 671 / 0 ARG1 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) AT1G24120 491 / 3e-173 ARL1 ARG1-like 1 (.1) AT1G59980 409 / 4e-141 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT3G62600 78 / 8e-16 ATERDJ3B DNAJ heat shock family protein (.1) AT5G01390 76 / 2e-15 DNAJ heat shock family protein (.1.2.3.4) AT2G20560 76 / 5e-15 DNAJ heat shock family protein (.1) AT4G28480 76 / 5e-15 DNAJ heat shock family protein (.1.2) AT3G08910 76 / 7e-15 DNAJ heat shock family protein (.1) AT5G16650 71 / 1e-14 Chaperone DnaJ-domain superfamily protein (.1) AT3G17830 75 / 3e-14 Molecular chaperone Hsp40/DnaJ family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G123200 [exp] 739 / 0 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.008G193500 [exp] 478 / 2e-168 AT1G24120 568 / 0.0 ARG1-like 1 (.1) Potri.010G036200 [exp] 476 / 1e-167 AT1G24120 566 / 0.0 ARG1-like 1 (.1) Potri.002G198000 [exp] 83 / 2e-17 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.014G122600 [exp] 81 / 1e-16 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 77 / 1e-15 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 77 / 2e-15 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 77 / 3e-15 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 74 / 3e-14 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005113 [exp] 713 / 0 AT1G68370 688 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Lus10034344 [exp] 635 / 0 AT1G68370 624 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Lus10029202 [exp] 469 / 1e-164 AT1G24120 616 / 0.0 ARG1-like 1 (.1) Lus10010717 [exp] 440 / 1e-152 AT1G24120 590 / 0.0 ARG1-like 1 (.1) Lus10030660 [exp] 438 / 3e-152 AT1G24120 588 / 0.0 ARG1-like 1 (.1) Lus10030827 [exp] 423 / 5e-147 AT1G24120 545 / 0.0 ARG1-like 1 (.1) Lus10014584 [exp] 94 / 7e-21 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1) Lus10032100 [exp] 84 / 1e-17 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1) Lus10022297 [exp] 83 / 2e-17 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10013981 [exp] 78 / 1e-15 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.010G122300.6 pacid=42798825 polypeptide=Potri.010G122300.6.p locus=Potri.010G122300 ID=Potri.010G122300.6.v4.1 annot-version=v4.1 ATGGGTTCGAAGAAGACAGACATTACATCAGCACCGCCGGTACTTCGAAGAGATCCATATGAAGTATTGTCGGTATCAAGGGATTCTACCGATCAGGAGA TTAAAACTGCTTATAGAAAACTTGCTCTCAAATATCATCCAGATAAAAATGCCAGTAATCCTGAAGCTTCAGAACTTTTCAAGGAGGTTGCATATTCCTA CAGTATACTCTCTGACCCTGAGAAGAGAAGGCAATATGACAGTGATGGGTTTGAGGCTTTGGATGTTGAAAGCATGGACATGGAAATTGATTTGTCTAAT CTGGGAACTGTCAATACAGTGTTTGCTGCATTATTCAGCAAGCTCGGTGTCCCTATCAAGACTACAATTTCTGCTAATGTTCTTGAAGAAGCTCTTAATG GAACTGTCACAGTCAGACCCCTCCCTGTCGGTACATCAGTTAGTGGGAAGGTGGAAAAGCAATGTGCCCACTTCTTTGGTGTAACCATAAATGAGCAACA AGCTGAGGCAGGGATTGTTGTAAGAGTAACTTCAACAACACAAAGCAAATTTAAGTTGCTATATTTTGAACAAGATGCCAATGGTGGCTATGGTTTGGCC TTACAGGAAGATAGTGAGAAACCTGGCAAGGAAGATAGTGAGAAATCTGGCAAGGTGACCTCTGCAGGGATGTATTTCTTACATTTTCAAGTGTACAGAA TGGATTCAACTTTGAATGCGTTAGCAATAGCCAAGGATCCTGATGCTGCTTTCTTTAAAAGGTTGGAAGGTCTTCAACCTTGTGAAGTTTCTGAACTGAA AGCTGGGACTCATATATTCGCAGTTTATGGAGATAATTTTTTCAAGACTGCTACCTACACAATCGAGGCACTTTGTGCAAAGACTTACGAGGATACCACA GAGAAGCTCAAGGATATTGAGGCCCAAATTCTTAGAAAAAGAAATGAGCTACGCCAATTTGAAACAGAGTACAGAAAGGCTTTGGCTCGTTTCCAAGAAG TAACCAACAGATACAGCCAGGAAAAGCAATCGGTTGATGAGCTGCTGAAACAGCGGGATAGTATACATGCTTCATTCACTGTAACTAAGATGGTGAGCTA CTTAAGTAATGGAAGTACAAGCAAAGTTATCGGTGACGATTCAAAAGCTGAGAGTCCAGTGGAAGATGGAGGCTCTGATGGAAAGGATAAATCCTCCAAA AAGAAATGGTTCAACTTGAACCTTAAAGGGTCTGAGAAAAAGTAG
AA sequence Show only first row Show all	>Potri.010G122300.6 pacid=42798825 polypeptide=Potri.010G122300.6.p locus=Potri.010G122300 ID=Potri.010G122300.6.v4.1 annot-version=v4.1 MGSKKTDITSAPPVLRRDPYEVLSVSRDSTDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYSILSDPEKRRQYDSDGFEALDVESMDMEIDLSN LGTVNTVFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPVGTSVSGKVEKQCAHFFGVTINEQQAEAGIVVRVTSTTQSKFKLLYFEQDANGGYGLA LQEDSEKPGKEDSEKSGKVTSAGMYFLHFQVYRMDSTLNALAIAKDPDAAFFKRLEGLQPCEVSELKAGTHIFAVYGDNFFKTATYTIEALCAKTYEDTT EKLKDIEAQILRKRNELRQFETEYRKALARFQEVTNRYSQEKQSVDELLKQRDSIHASFTVTKMVSYLSNGSTSKVIGDDSKAESPVEDGGSDGKDKSSK KKWFNLNLKGSEKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Potri.010G122300 [exp]	0	1
AT4G14600			Target SNARE coiled-coil domai...		Potri.005G159600 [exp]	1.73	0.8631
AT1G76200			unknown protein		Potri.002G012700 [exp]	4.69	0.8684
AT1G26550			FKBP-like peptidyl-prolyl cis-...		Potri.008G089900 [exp]	6.00	0.8511
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Potri.011G132400 [exp]	8.48	0.8181
AT3G29170			Eukaryotic protein of unknown ...		Potri.006G053300 [exp]	10.34	0.7156
AT1G76060		EMB1793	EMBRYO DEFECTIVE 1793, LYR fam...		Potri.002G016600 [exp]	17.49	0.8002	Pt-EMB1793.1
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Potri.002G082700 [exp]	17.88	0.8282
AT3G61200			Thioesterase superfamily prote...		Potri.002G155500 [exp]	17.94	0.7922
AT1G01230			ORMDL family protein (.1)		Potri.002G174400 [exp]	18.46	0.8193
AT5G20650		COPT5	copper transporter 5 (.1)		Potri.006G140700 [exp]	20.32	0.7471

Compare expression of checked genes

Potri.010G122300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.