Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38830 682 / 0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) AT2G31170 613 / 0 FIONA, SYCOARATH ,SYCO ARATH cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) AT3G56300 563 / 0 Cysteinyl-tRNA synthetase, class Ia family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G024300 [exp] 631 / 0 AT2G31170 856 / 0.0 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Potri.004G226700 [exp] 44 / 0.0004 AT1G09620 1647 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.008G122901 [exp] 0 / 1 AT5G38830 0 / 1 Cysteinyl-tRNA synthetase, class Ia family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034343 [exp] 749 / 0 AT5G38830 686 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10041428 [exp] 749 / 0 AT5G38830 687 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10010336 [exp] 742 / 0 AT5G38830 684 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10021862 [exp] 741 / 0 AT5G38830 686 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10001921 [exp] 605 / 0 AT2G31170 831 / 0.0 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Lus10001953 [exp] 265 / 3e-84 AT2G31170 305 / 5e-102 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Lus10001954 [exp] 186 / 5e-52 AT4G32120 489 / 8e-172 Galactosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF01406 [poplar] [flax] tRNA-synt_1e tRNA synthetases class I (C) catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.010G122500.1 pacid=42798023 polypeptide=Potri.010G122500.1.p locus=Potri.010G122500 ID=Potri.010G122500.1.v4.1 annot-version=v4.1 ATGGCAAACAACGAAGAGCTTAAACTCTACAACTCGATGACCCAACAAAAAGAGGTATTCAAGTCCCGTATTCCCGGCAAGGTTTCCATGTACGTTTGCG GTGTCACCTCCTATGATTTCAGTCACCTCGGTCACGCTCGCGCCGCTGTTGCCTTCGACATATTATTCAGATACCTACAACACTTGGGTTATGAAGTTAC TTATGTCCGCAATTTCACTGATATTGATGACAAGATAATTCGTCGGGCAAATGAGATTGGCGAAGATCCATTATCTTTAAGTAGCCGTTTTTGTGAAGAA TATCTTGTTGACATGACCGATCTGCAGTGCCTCATTCCAACCCACCAGCCACGTGTAACTGATCACGTGGAACAGATTAAGGACATGATAACTCAGATTA TAGAAAAAGACTGTGCATATGCAGTGGAGGGAGATGTCTTCTTTGCCGTTAATAAATCCCCAAATTATGGTCAGTTATCTGGGCAGAGGTTAGAAAATAA TAGAGCGGGGGAACGTGTTGCCGTTGACTCAAGGAAACGTAACCCTGCTGACTTTGCATTGTGGAAGGCAGCAAAGCCAGGTGAGCCAAGTTGGGAGAGC CCATGGGGCCCTGGAAGGCCAGGATGGCATATAGAATGCAGTGCAATGAGTGCTCAGTATCTGACCTTCAAATTTGACATCCATGGCGGTGGGATTGATT TGATTTTTCCACATCATGAGAATGAGATTGCCCAGAGCTGTGCAGCATGTGAAGAGAGCAGCGTGAGTTACTGGATGCATAATGGTCATGTCACTAATAA CAATGAGAAAATGTCAAAATCATTGGGTAATTTTTTCACAATTCGCCAGATCACTGAACGGTATCATCCACTGGCTTTGAGGCACTTCTTGATAAGTGCA CACTATCGCTCTCCCCTCAATTACTCTGTTTCGCAGCTGGAAAGCTCATCAGATGCTGTTTTCTACATTTATCAGACATTGCAAGATTGTGAGGATGCTT TATTGCCATTTCAAGAAGGAAGTCTGAAGGAAGGCGCAGGACAGAATGCCAACCTGGTTGCCATTACTGCTGATGCCCAAAAATGCATTTCTAGGCTACA TGAAGATTTTGAGACTAAAATGTCAGACGATTTGAACACTTCGCCTTTATTGACTGGTGCTTTCCAAGAAGCCTTGAAGGTCGTAAATGGTTCTTTGGGC ATGCTAAAGAAGAAACAACAAAAGAAGCAACAATTGTCATTGATTCGGTCCGTTACTGAAGTCAAGAAAGAAGTTACGGAAGTTCTGAGAATTCTGGGAT TGTTTCCTCCTTGCACTTGCGCCGAGGTTTTGCAGCAGTTAAAAGGGAAGGCATTGAAGAGAGCAGGACTAACAGAAGATGATGTGATGAGCCTGATTGA GGACAGAGCGGTGGCAAGGAAAAGTCAGGATTTCAAGAAAAGTGATCAGATCAGGACTGATTTGTCTGCAAGGGGCATTGCACTGATGGATGTGGGCAAG GAAACAGTTTGGAGGCCTTGTGTTCCTGTTGAGAACGAAGAGAAGGCAAAGACAGTTGTGGAAGAGCCAACGCCGCCACCACAAGCTGCATCAAGTTGA
AA sequence Show only first row Show all	>Potri.010G122500.1 pacid=42798023 polypeptide=Potri.010G122500.1.p locus=Potri.010G122500 ID=Potri.010G122500.1.v4.1 annot-version=v4.1 MANNEELKLYNSMTQQKEVFKSRIPGKVSMYVCGVTSYDFSHLGHARAAVAFDILFRYLQHLGYEVTYVRNFTDIDDKIIRRANEIGEDPLSLSSRFCEE YLVDMTDLQCLIPTHQPRVTDHVEQIKDMITQIIEKDCAYAVEGDVFFAVNKSPNYGQLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKPGEPSWES PWGPGRPGWHIECSAMSAQYLTFKFDIHGGGIDLIFPHHENEIAQSCAACEESSVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA HYRSPLNYSVSQLESSSDAVFYIYQTLQDCEDALLPFQEGSLKEGAGQNANLVAITADAQKCISRLHEDFETKMSDDLNTSPLLTGAFQEALKVVNGSLG MLKKKQQKKQQLSLIRSVTEVKKEVTEVLRILGLFPPCTCAEVLQQLKGKALKRAGLTEDDVMSLIEDRAVARKSQDFKKSDQIRTDLSARGIALMDVGK ETVWRPCVPVENEEKAKTVVEEPTPPPQAASS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Potri.010G122500 [exp]	0	1
					Potri.001G407500 [exp]	3.00	0.8662
AT1G52080		AR791	actin binding protein family (...		Potri.003G047200 [exp]	4.79	0.8699
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Potri.011G098100 [exp]	7.93	0.8481	DRT111.1
AT1G31660			unknown protein		Potri.001G394000 [exp]	11.61	0.7997
AT5G43960			Nuclear transport factor 2 (NT...		Potri.014G192900 [exp]	12.00	0.8505
AT2G40360			Transducin/WD40 repeat-like su...		Potri.003G009600 [exp]	12.48	0.8541
AT5G17900			microfibrillar-associated prot...		Potri.013G065600 [exp]	13.60	0.8536
AT1G44820			Peptidase M20/M25/M40 family p...		Potri.002G085400 [exp]	14.00	0.8266
AT5G47400			unknown protein		Potri.001G155800 [exp]	18.00	0.7880
AT2G32600			hydroxyproline-rich glycoprote...		Potri.016G097600 [exp]	20.00	0.8451

Compare expression of checked genes

Potri.010G122500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.