Plant FIBer expression Database

Potri.010G122800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G68330 136 / 7e-39 unknown protein
AT1G67050 97 / 5e-24 unknown protein
AT1G48780 69 / 9e-14 unknown protein
AT3G18300 53 / 4e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G122300
[exp]
398 / 8e-142 AT1G68330 134 / 6e-38 unknown protein
Potri.017G115700
[exp]
146 / 9e-43 AT1G67050 112 / 6e-30 unknown protein
Potri.004G098700
[exp]
143 / 1e-41 AT1G67050 117 / 6e-32 unknown protein
Potri.015G045700
[exp]
129 / 4e-36 AT1G48780 107 / 8e-28 unknown protein
Potri.012G055300
[exp]
107 / 8e-28 AT1G48780 105 / 2e-27 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041430
[exp]
177 / 3e-54 AT1G68330 111 / 4e-29 unknown protein
Lus10034341
[exp]
172 / 3e-52 AT1G68330 117 / 4e-31 unknown protein
Lus10009160
[exp]
72 / 1e-14 AT1G67050 152 / 1e-44 unknown protein
Lus10009004
[exp]
71 / 3e-14 AT1G48780 98 / 7e-24 unknown protein
Lus10009633
[exp]
67 / 8e-13 AT1G48780 93 / 5e-22 unknown protein
Lus10028485
[exp]
66 / 2e-12 AT1G67050 160 / 8e-48 unknown protein
PFAM info
Representative CDS sequence
>Potri.010G122800.1 pacid=42798029 polypeptide=Potri.010G122800.1.p locus=Potri.010G122800 ID=Potri.010G122800.1.v4.1 annot-version=v4.1
ATGGCTATAGATGTCTGCTCAGAGATTTCAAGCGCAGGAATTAGTCCAAGAATCTCCTTCTCCCATGATCTCAACCAAACAACAGATGCTGTTTCCATCG
AAGATCATCACCATCGCAGACTAGACTCATCTCTGTTGGATTCTGATTTCGATTTCTGCATTGGCAACAGTTTCGTTCAAGAATTGTCCTCTGCTGATGA
GCTCTTCTCTAATGGCAAGATCCTGCCTGTTGAGATAAAGAAACATTCCATTTCCTCTAAAGGTAATAATCATCAGCCGAAGTCTTTGACCTCTCAACCT
CAGCATCAGACCAGTACCGGGACTACAGAGAAGAAGCAACTGAAAGAATTCTTGTCAGAGAGTCTTGATGCAGATGAAAAACCTGCATCGAAATCTTTTT
GGCAGTTCAAGAGAAGCAGTAGTCTGAATTGCGATAGCACTAGAAGCAAAGGCCTAATTCGATCGCTACACTTTCTTTCCAGAAGTAACTCTACTGGGTC
AGCTCCAAATCCTCCAAAACAAGCAATGTTATCCAAGGAGACTCAAAAACCTAAATTGCAGAAACAAGCTTCCGTTCCAAGTCGAAAACCATCGGTGCCT
AGTTCTGCTGCATTTTATTCTTACAATCCACAGCAGAAGCCTCCTCTATTAAGGAAGTGTGGTTCTCATGGGAATGGATTCAGAATCAGTCCTGTCTTGA
ATATACCACCACCTTACATTTCCAGAGGAGCTGTCAATCCTTTTGGTCTTGGCTCACTGTTTTGTAACGGTAAGGTTAAAAGGAAGAAGGGGTAA
AA sequence
>Potri.010G122800.1 pacid=42798029 polypeptide=Potri.010G122800.1.p locus=Potri.010G122800 ID=Potri.010G122800.1.v4.1 annot-version=v4.1
MAIDVCSEISSAGISPRISFSHDLNQTTDAVSIEDHHHRRLDSSLLDSDFDFCIGNSFVQELSSADELFSNGKILPVEIKKHSISSKGNNHQPKSLTSQP
QHQTSTGTTEKKQLKEFLSESLDADEKPASKSFWQFKRSSSLNCDSTRSKGLIRSLHFLSRSNSTGSAPNPPKQAMLSKETQKPKLQKQASVPSRKPSVP
SSAAFYSYNPQQKPPLLRKCGSHGNGFRISPVLNIPPPYISRGAVNPFGLGSLFCNGKVKRKKG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G68330 unknown protein Potri.010G122800
[exp]
0 1
AT2G44100 AT-GDI1, ATGDI1 guanosine nucleotide diphospha... Potri.007G146600
[exp]
4.47 0.6917 GDI.2
AT4G35350 XCP1 xylem cysteine peptidase 1 (.1... Potri.004G207600
[exp]
4.47 0.7328 Pt-XCP1.1
AT5G12470 Protein of unknown function (D... Potri.001G256300
[exp]
6.63 0.7333
AT2G01050 zinc ion binding;nucleic acid ... Potri.017G002800
[exp]
7.54 0.6014
AT4G00430 PIP1;4, TMP-C, ... TRANSMEMBRANE PROTEIN C, PLASM... Potri.006G098100
[exp]
10.81 0.6955 Pt-MDPIP1.4
AT3G61640 AGP20, ATAGP20 arabinogalactan protein 20 (.1... Potri.012G032000
[exp]
12.72 0.6730
AT3G13930 Dihydrolipoamide acetyltransfe... Potri.001G198000
[exp]
20.12 0.6122
AT2G07180 Protein kinase superfamily pro... Potri.006G079600
[exp]
20.14 0.7016
Potri.001G121350
[exp]
20.19 0.7035
AT5G12250 TUB6 beta-6 tubulin (.1) Potri.003G126800
[exp]
24.33 0.6813 TUB10

Potri.010G122800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.