Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25350 558 / 0 OVA9 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) AT5G26710 110 / 3e-26 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) AT5G64050 51 / 9e-07 ATERS, ERS, OVA3 OVULE ABORTION 3, glutamate tRNA synthetase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G122200 [exp] 649 / 0 AT1G25350 1291 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Potri.005G001200 [exp] 108 / 9e-26 AT5G26710 1116 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Potri.013G000400 [exp] 104 / 3e-24 AT5G26710 1071 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Potri.009G169700 [exp] 54 / 1e-07 AT5G64050 922 / 0.0 OVULE ABORTION 3, glutamate tRNA synthetase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041433 [exp] 595 / 0 AT1G25350 1291 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Lus10034339 [exp] 583 / 0 AT1G25350 1290 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Lus10014335 [exp] 104 / 2e-24 AT5G26710 1071 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Lus10026044 [exp] 103 / 9e-24 AT5G26710 1080 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Lus10022659 [exp] 49 / 4e-06 AT5G64050 892 / 0.0 OVULE ABORTION 3, glutamate tRNA synthetase (.1) Lus10012512 [exp] 49 / 5e-06 AT5G64050 887 / 0.0 OVULE ABORTION 3, glutamate tRNA synthetase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00749 [poplar] [flax] tRNA-synt_1c tRNA synthetases class I (E and Q), catalytic domain CL0039 [poplar] [flax] PF04557 [poplar] [flax] tRNA_synt_1c_R2 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 CL0039 [poplar] [flax] PF04558 [poplar] [flax] tRNA_synt_1c_R1 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1
Representative CDS sequence Show only first row Show all	>Potri.010G122866.1 pacid=42798288 polypeptide=Potri.010G122866.1.p locus=Potri.010G122866 ID=Potri.010G122866.1.v4.1 annot-version=v4.1 ATGGCGGTGAAGGAAGAAGAGAGATTGGAGCTGTTCTTGAAGACCGGTCTGGATGAAAGGACTGCTCGTCATACCATTGCTAACAACAAGGTTACCAACA ATCTCACTGCTGTTATTCACGAGGCTGGTGTCACAGAGGGATGTAATCGAACAATTGGAAATCTTCTTTACACGGTTGCTACTAAGTACCCAGCAAATGC CCTCATTCATCGCCCTGCTTTGCTCGGATATATTGTCACCACAAAGATTAAAACCCCAGCCCAGCTAGAAGCTGCATTTTCATTTTTATCCAGTACTGCT TCAGAGAGTTTTGAGTTGAAGGGATTTGAAGAAGCTTGTGGTGTTGGGGTTGAAGTCTCTGAAGAAGATATTGAGCGGAGTGTTAATGAAGTATTTGAAC AAAACAAGGGATCGATATTGGAGCTCCGTTATCGAACAAATGTGGGAGATCTATTTGGGCATGTCCGCAAGAGGCTTCCATGGGCTGATCCAAAGATTGT CAAGAAACTCATTGATGCAAAATTATATGAATTGCTTGGTGGAAGGACTGCAGCAGATAACGAGAAGCCTTCAAAACAGAAAAAAGAAAAGCCTGCTAAA GTCGAAGTGCATACTGAAATATTCTTCAGTGATCGACCTGTTCTGCAATGCTGCAACACAAAGGAGGTGCTTGATAAGCACCTCAAAAGAACCAGCAGGA AAGTTTATACCCGCTTCCCCCCTGAGCCAAATGGATATCTACACATTGGTCATGCCAAGGCAATGTTTGTTAGCTTTGGCCTCGCAAAGGAACAAGGTGG ATGCTGCTACCTTAGGTATGATGATACAAACCCTGAAGCTGAAAAGAAAGAATACATTGATCATATTGAGGAGATTGTCGAGTGGATGGGTTGGAAACCA TTTAAGATCACTTACACTAGTGATTATTTTCAAGAGCTTTATGAATTAGCAGTTGAGCTGATACAAAGGGGTCATGCTTATGTTGATCACCAGACACCGG AAGAGATCAAGGAGTATAGAGAAAAGAAGATGAACAGTCCTTGGAGGGATAGACCTATTGCAGAATCTTTGAAACTTTTTGAATTTGAAACTTGA
AA sequence Show only first row Show all	>Potri.010G122866.1 pacid=42798288 polypeptide=Potri.010G122866.1.p locus=Potri.010G122866 ID=Potri.010G122866.1.v4.1 annot-version=v4.1 MAVKEEERLELFLKTGLDERTARHTIANNKVTNNLTAVIHEAGVTEGCNRTIGNLLYTVATKYPANALIHRPALLGYIVTTKIKTPAQLEAAFSFLSSTA SESFELKGFEEACGVGVEVSEEDIERSVNEVFEQNKGSILELRYRTNVGDLFGHVRKRLPWADPKIVKKLIDAKLYELLGGRTAADNEKPSKQKKEKPAK VEVHTEIFFSDRPVLQCCNTKEVLDKHLKRTSRKVYTRFPPEPNGYLHIGHAKAMFVSFGLAKEQGGCCYLRYDDTNPEAEKKEYIDHIEEIVEWMGWKP FKITYTSDYFQELYELAVELIQRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEFET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Potri.010G122866 [exp]	0	1
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Potri.001G408800 [exp]	4.69	0.8706	Pt-UBP14.2
AT3G07060		EMB1974	embryo defective 1974, NHL dom...		Potri.002G241366 [exp]	8.94	0.8615
AT3G04480			endoribonucleases (.1)		Potri.013G047400 [exp]	9.16	0.8898
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Potri.001G453700 [exp]	12.56	0.8294
AT5G15270			RNA-binding KH domain-containi...		Potri.008G088600 [exp]	16.97	0.8229
AT5G17680			disease resistance protein (TI...		Potri.013G097000 [exp]	17.88	0.8822
AT5G36930			Disease resistance protein (TI...		Potri.013G096923 [exp]	19.59	0.8912
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.017G141000 [exp]	20.66	0.8371
AT3G60310			unknown protein		Potri.006G144600 [exp]	23.36	0.7966
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Potri.010G065000 [exp]	24.00	0.7939	CHM.1

Compare expression of checked genes

Potri.010G122866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.