Plant FIBer expression Database

Potri.010G123500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G68290 412 / 2e-146 ENDO2 ,ENDO 2 endonuclease 2 (.1)
AT4G21585 332 / 2e-114 ENDO4 endonuclease 4 (.1)
AT1G11190 296 / 1e-100 ENDO1, BFN1 ENDONUCLEASE 1, bifunctional nuclease i (.1)
AT4G21590 294 / 1e-99 ENDO3 endonuclease 3 (.1.2)
AT4G21600 294 / 1e-99 ENDO5 endonuclease 5 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G044400
[exp]
348 / 5e-121 AT4G21585 448 / 3e-160 endonuclease 4 (.1)
Potri.011G044500
[exp]
290 / 7e-98 AT1G11190 440 / 5e-157 ENDONUCLEASE 1, bifunctional nuclease i (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034336
[exp]
409 / 4e-145 AT1G68290 391 / 5e-138 endonuclease 2 (.1)
Lus10041437
[exp]
339 / 5e-118 AT1G68290 327 / 2e-113 endonuclease 2 (.1)
Lus10018451
[exp]
311 / 3e-106 AT4G21585 408 / 2e-144 endonuclease 4 (.1)
Lus10018452
[exp]
290 / 4e-98 AT1G11190 440 / 3e-157 ENDONUCLEASE 1, bifunctional nuclease i (.1)
Lus10011232
[exp]
293 / 2e-95 AT1G11190 441 / 6e-153 ENDONUCLEASE 1, bifunctional nuclease i (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0368 PhosC-NucP1 PF02265 S1-P1_nuclease S1/P1 Nuclease
Representative CDS sequence
>Potri.010G123500.2 pacid=42798124 polypeptide=Potri.010G123500.2.p locus=Potri.010G123500 ID=Potri.010G123500.2.v4.1 annot-version=v4.1
ATGGGGTATTGGTGTATCAATCTTTTGACAATTGTTTCACTTCTGCTTCTGTTTCCAGTGATTAATGGTTGGGGAATTGATGGACACCTCACAGTATGCA
GAATTGCTCAGTCCCGCTTAAGTGAAGCTGCTGCAGATGCTGTCAAGCAACTGCTGCCAGAATATGCAGGGAGTGACTTAGGGAGTGTGTGCTCATGGGC
AGACGAGGTTAGGTTCCGTTATCATTGGTCAGCCCCTCTTCATTTCATCAATACCCCAGATGTTTGCAACTACAAATACACTAGGGATTGCGAGGATGAT
ACTGGTGAAAAAGGAAGGTGTGTTGCTGGGGCAATTAACAATTACACTACCCAGCTTCTTACCTACAACAGTGGCTCCTCGCAAGCTGATAATAACCTGA
CAGAAGCCCTTCTCTTCCTTTCTCATTTTATGGGAGACATCCATCAGCCTCTACATGTGGGTTTTGCTTCAGACAAAGGAGGCAACACCATTGATGTCCA
TTGGTACAGAAGGAAACAAGTCCTTCACCATATTTGGGATGCCAGTATAATAGAGACAGCAGAGGAAAGATTGTACAACTCAAACGTGGATGACTTGGTT
GATGCCGTTCAGAAAAATATCACGAATGACTGGGCAGATTTAATTCCAGGATGGGAGACCTGCAGCCTTAACAAGACAGCCTGCCCGGACGTATACGCAT
CTGAAGGTATCAAAGCAGCATGCGATTGGGCATATAAAGGGGCGGCTGAAGGGACAGTGTTAGAAGATGATTATTTCCTATCCCGTTTACCGATTGTGAA
ATTGCGGTTAGCTCAAGGTGGAGTTCGTCTGGCAGCCACGCTCAACCGCATTTTTCTGTGA
AA sequence
>Potri.010G123500.2 pacid=42798124 polypeptide=Potri.010G123500.2.p locus=Potri.010G123500 ID=Potri.010G123500.2.v4.1 annot-version=v4.1
MGYWCINLLTIVSLLLLFPVINGWGIDGHLTVCRIAQSRLSEAAADAVKQLLPEYAGSDLGSVCSWADEVRFRYHWSAPLHFINTPDVCNYKYTRDCEDD
TGEKGRCVAGAINNYTTQLLTYNSGSSQADNNLTEALLFLSHFMGDIHQPLHVGFASDKGGNTIDVHWYRRKQVLHHIWDASIIETAEERLYNSNVDDLV
DAVQKNITNDWADLIPGWETCSLNKTACPDVYASEGIKAACDWAYKGAAEGTVLEDDYFLSRLPIVKLRLAQGGVRLAATLNRIFL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G68290 ENDO2 ,ENDO 2 endonuclease 2 (.1) Potri.010G123500
[exp]
0 1
AT5G27550 P-loop containing nucleoside t... Potri.005G031500
[exp]
44.15 0.7492
AT1G69550 disease resistance protein (TI... Potri.005G031899
[exp]
66.99 0.7354
AT3G54440 glycoside hydrolase family 2 p... Potri.001G027400
[exp]
102.61 0.7258
AT3G14260 Protein of unknown function (D... Potri.003G072200
[exp]
109.53 0.7144
AT2G20142 Toll-Interleukin-Resistance (T... Potri.005G030413
[exp]
114.19 0.7187
AT5G21170 AKINBETA1 5'-AMP-activated protein kinas... Potri.001G220800
[exp]
149.59 0.6888
AT2G20142 Toll-Interleukin-Resistance (T... Potri.005G032000
[exp]
151.55 0.7093
AT1G76990 ACR3 ACT domain repeat 3 (.1.2.3.4.... Potri.005G185600
[exp]
159.34 0.7073 Pt-ACR3.2
AT1G08920 ESL1 ERD (early response to dehydra... Potri.005G037000
[exp]
178.07 0.6897
AT1G59730 ATH7 thioredoxin H-type 7 (.1) Potri.008G194100
[exp]
179.94 0.6963

Potri.010G123500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.