Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77420 510 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT5G16120 413 / 6e-144 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G39420 265 / 2e-86 alpha/beta-Hydrolases superfamily protein (.1) AT2G47630 261 / 2e-84 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 255 / 2e-82 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G62860 254 / 1e-81 alpha/beta-Hydrolases superfamily protein (.1) AT3G55180 245 / 1e-78 alpha/beta-Hydrolases superfamily protein (.1) AT1G11090 244 / 6e-78 alpha/beta-Hydrolases superfamily protein (.1) AT2G39400 239 / 3e-76 alpha/beta-Hydrolases superfamily protein (.1) AT3G55190 216 / 4e-67 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G114800 [exp] 413 / 3e-143 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G212200 [exp] 248 / 9e-80 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G049000 [exp] 244 / 4e-78 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G129000 [exp] 238 / 2e-75 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204200 [exp] 235 / 3e-74 AT2G47630 493 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G046500 [exp] 226 / 7e-71 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G040000 [exp] 186 / 2e-55 AT5G19290 507 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G222300 [exp] 178 / 1e-52 AT5G19290 472 / 8e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G059200 [exp] 168 / 1e-48 AT1G52760 560 / 0.0 lysophospholipase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041441 [exp] 543 / 0 AT1G77420 496 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Lus10034331 [exp] 541 / 0 AT1G77420 499 / 8e-178 alpha/beta-Hydrolases superfamily protein (.1) Lus10017601 [exp] 406 / 4e-141 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033561 [exp] 379 / 5e-130 AT5G16120 441 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10009169 [exp] 373 / 3e-128 AT5G16120 490 / 2e-175 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017600 [exp] 347 / 2e-118 AT5G16120 409 / 5e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10028475 [exp] 275 / 4e-91 AT5G16120 338 / 7e-117 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10040328 [exp] 253 / 1e-81 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10007877 [exp] 246 / 4e-78 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10023448 [exp] 247 / 7e-76 AT2G39420 459 / 2e-159 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.010G124000.1 pacid=42798099 polypeptide=Potri.010G124000.1.p locus=Potri.010G124000 ID=Potri.010G124000.1.v4.1 annot-version=v4.1 ATGGATCTGTCTTTCACCCTCAGATTCCGCCCACCTAACCCTCCTCTCTCTCGCCGGAAACTGGAATCTCCGATCATCCATCCGCTAAAAAGGTTCCTAC CTACTTTTCATCGGCCTGATATTAAGCCAAACGCTAAACCATTTCCAATGTCATCAAGGACCCACCAGTCAACTGTCGTGACCGCTAAGTTGAATAAGCC AATAGATGGTGTGAGTGAAGAGCTGAACTTGATTGCTTCGCAAAATTTAGACCATGCACCAGCTCGCAGAAGGGTTCGGTCAGCTTTCGTTCAAGTGCAA CAGGAGCTTGATCACCCACTTTTCAAGATGACACCTCCTGGGAAGACATACGAGTGGTATGAAAGGAATTCTAGAGGTTTGGAAATTTTTTGCAAAAGAT GGATTCCGGAACCTGGAGTTCGAATGAAAGGCGCTGTGTTTTTTTGCCATGGTTATGGTGATACCTGTACCTTCTTCTTTGAAGGTATTGCAAAACGAAT TGTTGCATCTGGATATGGTGTTTATGCTTTGGACCATCCTGGTTTTGGCCTATCTGAAGGATTGCATGGTTACATACCAAGCTTTGATGAATTAGCTGAC AATGTTATTGAACAGTACACAAAAATAAAAGGACGTCCTGAGTTAAGAGGGTTGCCCTGCTTCTTACTGGGGCAGTCCATGGGAGGAGCTGTTGCTCTCA AAGTTCATCTAAAAAAACCACGTGCATGGGATGGCATAATCCTTGTAGCCCCTATGTGTAGAATTGCAGAGGATGTTCAGCCCCCAGCACCAGTTCTTAA GGCATTAATTCTTCTTTCTAAAGTTATGCCAAAAGCAAAGCTCTTGCCACAGAAAGATCTAGCAGCACTTTGCTTCAGAGACCTGAAGAAAAGAAAAATG GCCGACTATAATGTTATCTGTTACAATGACCAAATGCGATTGAAAACTGCTGTGGAGCTCCTAAATGCTACCAAGGATATTGAGAAACAAGTGGAAAAGG TTTCATCCCCATTGTTGATTCTTCATGGAGCTGCTGATAAGGTGACAGATCCTTTAGTTAGCCAGTTTCTCTATCAGAAGGCCTCTAGCAAAGACAAAAC GCTAAAGCTCTATGAAGGGGCCTATCACAGCATTCTTGAAGGGGAGCCTGATACCAAAATCTTTGCAGTCTTCGATGATATTATTGCGTGGCTTGATTCC AGATGCTCGGCTAAGTAA
AA sequence Show only first row Show all	>Potri.010G124000.1 pacid=42798099 polypeptide=Potri.010G124000.1.p locus=Potri.010G124000 ID=Potri.010G124000.1.v4.1 annot-version=v4.1 MDLSFTLRFRPPNPPLSRRKLESPIIHPLKRFLPTFHRPDIKPNAKPFPMSSRTHQSTVVTAKLNKPIDGVSEELNLIASQNLDHAPARRRVRSAFVQVQ QELDHPLFKMTPPGKTYEWYERNSRGLEIFCKRWIPEPGVRMKGAVFFCHGYGDTCTFFFEGIAKRIVASGYGVYALDHPGFGLSEGLHGYIPSFDELAD NVIEQYTKIKGRPELRGLPCFLLGQSMGGAVALKVHLKKPRAWDGIILVAPMCRIAEDVQPPAPVLKALILLSKVMPKAKLLPQKDLAALCFRDLKKRKM ADYNVICYNDQMRLKTAVELLNATKDIEKQVEKVSSPLLILHGAADKVTDPLVSQFLYQKASSKDKTLKLYEGAYHSILEGEPDTKIFAVFDDIIAWLDS RCSAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77420			alpha/beta-Hydrolases superfam...		Potri.010G124000 [exp]	0	1
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Potri.013G006400 [exp]	13.63	0.7412
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Potri.017G070200 [exp]	17.32	0.7287	Pt-ACG12.2
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Potri.016G119400 [exp]	23.62	0.6984
AT4G00840			DHHC-type zinc finger family p...		Potri.014G104000 [exp]	24.73	0.7104
AT1G75840		ATROP4, ATGP3, ...	RHO-LIKE GTP BINDING PROTEIN 4...		Potri.013G123800 [exp]	26.98	0.7312
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Potri.003G050100 [exp]	36.55	0.7110	ATHB.11
AT1G01630			Sec14p-like phosphatidylinosit...		Potri.003G162100 [exp]	37.74	0.7300
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Potri.004G013400 [exp]	40.24	0.7094	PDT1
AT1G10650			SBP (S-ribonuclease binding pr...		Potri.012G082200 [exp]	62.24	0.7027
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.011G106200 [exp]	63.07	0.6823

Compare expression of checked genes

Potri.010G124000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.