Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	COL6.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25440 311 / 2e-102 CO COL16 B-box type zinc finger protein with CCT domain (.1) AT1G68520 310 / 4e-102 CO COL6 B-box type zinc finger protein with CCT domain (.1) AT1G73870 238 / 3e-74 CO COL7 B-box type zinc finger protein with CCT domain (.1) AT1G49130 102 / 6e-24 CO COL8 B-box type zinc finger protein with CCT domain (.1.2) AT4G25990 96 / 2e-21 CIL CCT motif family protein (.1.2) AT5G14370 92 / 2e-20 CCT motif family protein (.1) AT5G57180 92 / 4e-20 CIA2 chloroplast import apparatus 2 (.1.2.3) AT1G07050 81 / 2e-17 CCT motif family protein (.1) AT5G24930 73 / 7e-14 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT5G57660 67 / 4e-12 CO COL5, ATCOL5 CONSTANS-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G120400 [exp] 756 / 0 AT1G25440 314 / 2e-103 B-box type zinc finger protein with CCT domain (.1) Potri.015G054600 [exp] 379 / 8e-129 AT1G25440 272 / 2e-87 B-box type zinc finger protein with CCT domain (.1) Potri.018G142100 [exp] 92 / 7e-20 AT5G57180 160 / 5e-44 chloroplast import apparatus 2 (.1.2.3) Potri.001G339200 [exp] 89 / 1e-19 AT5G14370 174 / 5e-52 CCT motif family protein (.1) Potri.001G281700 [exp] 86 / 3e-19 AT1G07050 138 / 8e-41 CCT motif family protein (.1) Potri.006G075200 [exp] 89 / 8e-19 AT5G57180 267 / 5e-85 chloroplast import apparatus 2 (.1.2.3) Potri.009G077100 [exp] 71 / 4e-14 AT1G07050 119 / 3e-34 CCT motif family protein (.1) Potri.018G096084 [exp] 67 / 5e-12 AT5G57660 283 / 5e-93 CONSTANS-like 5 (.1) Potri.004G108320 [exp] 67 / 8e-12 AT3G02380 302 / 8e-101 CONSTANS-like 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041449 [exp] 349 / 3e-116 AT1G25440 288 / 4e-93 B-box type zinc finger protein with CCT domain (.1) Lus10034322 [exp] 293 / 5e-95 AT1G25440 213 / 1e-64 B-box type zinc finger protein with CCT domain (.1) Lus10022311 [exp] 71 / 4e-13 AT5G14370 141 / 1e-38 CCT motif family protein (.1) Lus10020012 [exp] 69 / 3e-12 AT5G57180 211 / 2e-60 chloroplast import apparatus 2 (.1.2.3) Lus10014886 [exp] 68 / 4e-12 AT5G14370 152 / 3e-42 CCT motif family protein (.1) Lus10026238 [exp] 67 / 4e-12 AT5G24930 163 / 9e-48 CONSTANS-like 4 (.1) Lus10026909 [exp] 67 / 5e-12 AT5G24930 404 / 3e-140 CONSTANS-like 4 (.1) Lus10020105 [exp] 67 / 7e-12 AT5G24930 398 / 6e-138 CONSTANS-like 4 (.1) Lus10042431 [exp] 64 / 1e-11 AT5G24930 180 / 7e-55 CONSTANS-like 4 (.1) Lus10005106 [exp] 61 / 5e-10 AT3G02380 194 / 6e-59 CONSTANS-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [poplar] [flax] zf-B_box B-box zinc finger CL0281 [poplar] [flax] CCT PF06203 [poplar] [flax] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Potri.010G125100.1 pacid=42799156 polypeptide=Potri.010G125100.1.p locus=Potri.010G125100 ID=Potri.010G125100.1.v4.1 annot-version=v4.1 ATGATTTGCAACAAAAGTTTGGCCAACGCTGTTGGTGGCAGAACTGCCAGAGCCTGTGATAGTTGTATAAAAAAACGTGCTAGTTGGTACTGTGCAGCTG ATGATGCATTTCTTTGCCAAGCCTGTGACTCTTCAGTTCACTCTGCGAATCTATTAGCACGTAGACATGAAAGGGTTCGCTTAAAGTCCGCATCACTTAA ATCTTCGGACGCAGGTTCGAAAGATAATTCTATGCCATCATGGCATGGAGGGTTCACTAGAAAGGCCAGGACACCAAGACATGGCAAGCCAGTGTCTCAA TCAAAAATTGAAGAGACGACAAGGAATATTCCGATTCCACTAGTGCCTGAAGTGGGTTCAGATGAGATATCGCTTGAAGATAATGAAGAAGAGCATCTGC TGTATAGGGTTCCAATCTTTGACCCTTTTGCTGCCGAATTATGCACTTCAACAACAGTCTCGAATGAAGCGGGAGCAGTAGTACCAGCCGGTGGTACTGA TACTGATCAAAGAGCTGCTGATTCTAGTGGAACCGAATCAAAGGTTTTGTTAGGAGGTAGTGAAGGGAAGGATGTTGAGAGTTTGCATGGATTTCTACCA TCTGATATGGATCTTGCAGAGTTTGCAGCTGATATGGAGAGTTTGCTTGGTAGGGGTCTTGAAAATGAGTCTTTTGGGATGGAGGAGCTGGGACTTATGG ACTGTAAAGAAGAAAACGAGTTGGGGGTGAAAGGGTATCCTTTAGGCAATGGAAAGGTGAAGGTTGAAGAGGAAGAGGATGCAGGCATGGAAGAAAAAGC TGTTAGGGAATGTCATGCTGATATTGAGATTGATATTGCAAAAGATCCGCCTTTTGAGTTGAGCTTTGACTATGACTCCCCTGCAACTTGTGTAGAGGAA GATGAGAAGGTAGGGATTGAAGAGGGAGACTTGAAGAACAGTGATGGAGAATATGAAGATGATGGTGGTGCAAAGAAGAAGAGGAGAACACTGCTGAGTC TGGATTATGAGGCTGTCATGACTGCTTGGGCAAGCCAGGGGTCTCCCTGGACTAACGGTTACAGGCCCGATTTCGACGCTGATGAATGTTGGCCTGACGC TGACTGCATGGGTATTTGCGGAGCCCAACTTCATCACCCTTATGGAGATGTGAGTGGATTAGGGGCACACCCTGCAGCTTTGGTGGACGGAGGGCGCGAA GCTAGAGTATCCAGGTATAGAGAGAAGCGGAGAACAAGACTGTTCTCCAAGAAAATAAGATACGAGGTCAGGAAATTGAATGCAGAGAAGAGGCCCAGGA TGAAAGGGAGGTTCGTTAAAAGGACAACCTTCGCCGGAAAATAA
AA sequence Show only first row Show all	>Potri.010G125100.1 pacid=42799156 polypeptide=Potri.010G125100.1.p locus=Potri.010G125100 ID=Potri.010G125100.1.v4.1 annot-version=v4.1 MICNKSLANAVGGRTARACDSCIKKRASWYCAADDAFLCQACDSSVHSANLLARRHERVRLKSASLKSSDAGSKDNSMPSWHGGFTRKARTPRHGKPVSQ SKIEETTRNIPIPLVPEVGSDEISLEDNEEEHLLYRVPIFDPFAAELCTSTTVSNEAGAVVPAGGTDTDQRAADSSGTESKVLLGGSEGKDVESLHGFLP SDMDLAEFAADMESLLGRGLENESFGMEELGLMDCKEENELGVKGYPLGNGKVKVEEEEDAGMEEKAVRECHADIEIDIAKDPPFELSFDYDSPATCVEE DEKVGIEEGDLKNSDGEYEDDGGAKKKRRTLLSLDYEAVMTAWASQGSPWTNGYRPDFDADECWPDADCMGICGAQLHHPYGDVSGLGAHPAALVDGGRE ARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTTFAGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25440	CO	COL16	B-box type zinc finger protein...		Potri.010G125100 [exp]	0	1	COL6.3
AT2G20740			Tetraspanin family protein (.1...		Potri.011G050900 [exp]	2.00	0.9322
AT1G04880	ARID		HMG (high mobility group) box ...		Potri.017G055200 [exp]	2.82	0.9316
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Potri.005G182600 [exp]	3.46	0.9126	Pt-NADK2.1
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Potri.004G209900 [exp]	5.00	0.9153
AT1G64430			Pentatricopeptide repeat (PPR)...		Potri.001G090800 [exp]	12.40	0.8939
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Potri.011G009600 [exp]	14.69	0.9174
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.013G034400 [exp]	21.35	0.8686
AT5G17680			disease resistance protein (TI...		Potri.001G307300 [exp]	24.24	0.8850
AT1G64430			Pentatricopeptide repeat (PPR)...		Potri.003G140800 [exp]	26.11	0.8875
AT4G19830			FKBP-like peptidyl-prolyl cis-...		Potri.012G119800 [exp]	26.49	0.8750

Compare expression of checked genes

Potri.010G125100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.