Plant FIBer expression Database

HMT4 (Potri.010G125200) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol HMT4
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G25900 530 / 0 HMT-1, ATHMT-1 Homocysteine S-methyltransferase family protein (.1.2.3)
AT3G22740 375 / 4e-130 HMT3 homocysteine S-methyltransferase 3 (.1)
AT3G63250 373 / 2e-129 HMT-2, ATHMT-2 ,HMT2 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G213100
[exp]
376 / 1e-130 AT3G63250 532 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2)
Potri.010G083600
[exp]
369 / 6e-128 AT3G22740 512 / 0.0 homocysteine S-methyltransferase 3 (.1)
Potri.002G049800
[exp]
363 / 2e-125 AT3G63250 512 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2)
Potri.008G155900
[exp]
343 / 1e-117 AT3G22740 485 / 2e-173 homocysteine S-methyltransferase 3 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041451
[exp]
550 / 0 AT3G25900 521 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3)
Lus10034320
[exp]
544 / 0 AT3G25900 521 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3)
Lus10039356
[exp]
367 / 4e-127 AT3G22740 505 / 0.0 homocysteine S-methyltransferase 3 (.1)
Lus10014686
[exp]
356 / 1e-122 AT3G63250 507 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2)
Lus10006602
[exp]
324 / 1e-110 AT3G22740 455 / 7e-162 homocysteine S-methyltransferase 3 (.1)
Lus10006901
[exp]
299 / 5e-101 AT3G63250 429 / 8e-153 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02574 S-methyl_trans Homocysteine S-methyltransferase
Representative CDS sequence
>Potri.010G125200.1 pacid=42797372 polypeptide=Potri.010G125200.1.p locus=Potri.010G125200 ID=Potri.010G125200.1.v4.1 annot-version=v4.1
ATGGGTTTCCAGAAGGCAAAAACATCGTTGGAGGATCTGATAAAGAAGGCAGGAGGCTGCGCGGTTATCGACGGTGGATTCGCCACCCAGCTTGAGAGAC
ACGGCGCAACCATTAACGACCCTCTTTGGAGTGCTCTCTGTTTGATCAAAGATCCTGACCTCATCAAGCGGGTTCACTTGGAATATTTAGAGGCTGGTGC
AGACATTTTGGTTACTTCTTCTTACCAGGCCACACTTCCAGGATTTTTGTCCAGGGGATTATCCGCTGAAGAAGGAGAATTGTTATTGAAGAAAAGTGTT
ACATTGGCTGTTGAAGCCCGTAATAAGTTCTGGGATGCTGTGGAAAGGAATCCTGGGCACAGTTATAACCGAGCTTTGGTTGCAGCCTCCATTGGAAGCT
ATGGAGCTTATCTGGCTGATGGCTCTGAGTACAGTGGGTGTTATGGACCAGATGTGAATCTGGAAAAGCTGAAGGATTTCCATCGGCGGAGGTTGCAAGT
TCTGGTTAAAGCAAGTCCGGATTTGCTGGCCTTTGAGACCATTCCCAATAAACTTGAAGCCCAGGCCTGTGTTGAGTTACTTGAAGAAGAAAACATCAAT
ATTCCATCTTGGATTTGCTTCAGTTGCGTGGATGGTGAGAATGCCCCATCTGGAGAGAGCTTCCAGCAGTGCCTTGAGGCCATAAATAAGAGTGATAGAG
TAAAAGCAGTTGGAATTAATTGTGCGCCTCCCCATTTTATTGAAAGTCTCATCTGCAAATTTAAGGAGTTGACTGAAAAGTTAATAGTTGTATATCCGAA
TAGCGGCGAGGTATGGGATGGCAGAGCTAAAAGATGGCTGCCATCAACCTGTTTTGATGATGATAAATTCGAGGTCTTTGCAACGAGATGGCACGACTTA
GGAGCTAGCCTCATTGGAGGCTGTTGTCGGACAACACCTTCTACTATTCAAGCCATTTCAAAAGTTTTAAAGGACCCTAAGCAGTCGTAG
AA sequence
>Potri.010G125200.1 pacid=42797372 polypeptide=Potri.010G125200.1.p locus=Potri.010G125200 ID=Potri.010G125200.1.v4.1 annot-version=v4.1
MGFQKAKTSLEDLIKKAGGCAVIDGGFATQLERHGATINDPLWSALCLIKDPDLIKRVHLEYLEAGADILVTSSYQATLPGFLSRGLSAEEGELLLKKSV
TLAVEARNKFWDAVERNPGHSYNRALVAASIGSYGAYLADGSEYSGCYGPDVNLEKLKDFHRRRLQVLVKASPDLLAFETIPNKLEAQACVELLEEENIN
IPSWICFSCVDGENAPSGESFQQCLEAINKSDRVKAVGINCAPPHFIESLICKFKELTEKLIVVYPNSGEVWDGRAKRWLPSTCFDDDKFEVFATRWHDL
GASLIGGCCRTTPSTIQAISKVLKDPKQS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G25900 HMT-1, ATHMT-1 Homocysteine S-methyltransfera... Potri.010G125200
[exp]
0 1 HMT4
AT1G01430 TBL25 TRICHOME BIREFRINGENCE-LIKE 25... Potri.014G095800
[exp]
1.73 0.9204
AT4G34050 CCoAOMT1 caffeoyl coenzyme A O-methyltr... Potri.001G304800
[exp]
2.44 0.9051 CAM2
AT2G18060 NAC ANAC037, VND1 Arabidopsis NAC domain contain... Potri.007G014400
[exp]
3.87 0.8960
AT5G24760 GroES-like zinc-binding dehydr... Potri.004G067000
[exp]
6.70 0.8809
AT5G03760 ATCSLA9, RAT4, ... RESISTANT TO AGROBACTERIUM TRA... Potri.008G026400
[exp]
8.06 0.8715 Pt-MANS.1
AT5G54690 IRX8, GAUT12, L... IRREGULAR XYLEM 8, galacturono... Potri.001G416800
[exp]
9.16 0.8925
AT5G37600 ATGLN1;1, GLN1;... ARABIDOPSIS THALIANA GLUTAMINE... Potri.015G034700
[exp]
11.22 0.8700 Pt-NCPGS.3
AT3G21530 DNAse I-like superfamily prote... Potri.008G198100
[exp]
12.00 0.8626
AT2G32720 B5 #4, B5#4, AT... ARABIDOPSIS CYTOCHROME B5 ISOF... Potri.002G242500
[exp]
12.04 0.8919
AT3G51780 ATBAG4 BCL-2-associated athanogene 4 ... Potri.009G074300
[exp]
12.96 0.8844

Potri.010G125200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.