Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68540 428 / 1e-151 TKPR2, CCRL6 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G25460 378 / 5e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 275 / 3e-91 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G51410 239 / 3e-77 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19440 237 / 2e-76 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 230 / 1e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 213 / 3e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09480 207 / 3e-64 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 203 / 3e-63 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G42800 200 / 2e-61 M318, TT3, DFR dihydroflavonol 4-reductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G120200 [exp] 518 / 0 AT1G68540 505 / 0.0 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G138600 [exp] 248 / 2e-80 AT4G35420 535 / 0.0 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Potri.009G057500 [exp] 235 / 1e-75 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 233 / 8e-75 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 232 / 2e-74 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057800 [exp] 231 / 5e-74 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 230 / 9e-74 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G046400 [exp] 215 / 1e-67 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046100 [exp] 215 / 1e-67 AT1G15950 511 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035016 [exp] 443 / 3e-157 AT1G68540 468 / 2e-167 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006141 [exp] 243 / 6e-79 AT4G35420 484 / 2e-173 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Lus10039595 [exp] 238 / 1e-76 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 238 / 1e-76 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 225 / 1e-71 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 223 / 4e-71 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 223 / 5e-71 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 218 / 4e-69 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 217 / 1e-68 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041651 [exp] 211 / 7e-66 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.010G125400.1 pacid=42799359 polypeptide=Potri.010G125400.1.p locus=Potri.010G125400 ID=Potri.010G125400.1.v4.1 annot-version=v4.1 ATGCCTGAATATTGTGTCACAGGTGGAACAGGTTTCATAGCAGCATACTTGGTCAAGTCCTTGCTAGAGAAAGGTCACACCGTGCGGATCACAGTGCGAG ACCCAGGGAATGTTAGAAAGGTTGGGTTTCTTCAGGAGTTTAATGGAGCCAAGGAGAGACTCAAGATTTTTAAAGCCGAATTGTTGGAAGAAGGCAGCTT TGACGAGGCAATTCAAGGGGTTGATGGGGTCTTCCACGTCGCTGCACCGGTGCTTGTTCCTTATAGTGATAGAATTCAGGAAACTTTGATTGATCCATGT ATTAAGGGCACCCTGAATGTGCTGAACTCCTGCTTGAAAGCTAGTAGTGTGAAACGGGTTGTGTTCACCTCTTCATCTTCCACAGTGAGATACCGTGATG ATACGCCACAAATTTTCTCTCTTAATGAGTCACATTGGAGTGATACTGAGTACTGCAAACGCCATAATCTCTGGTACGCCTATGCAAAGACCGTAGCAGA GAAAGAGGCGTGGAGAGTATCAAAAGAAAATGGGATTGATCTGGTATCCTTCATCCCATCTTTCGTAGTTGGTCCATTGCTTGCACCAGAACCAAACAGT ACACTGCTTTTGATACAATCTGTAGTTAAAGGCTCACGAGGAGAATATCCAAACATGACGGTGGGGTTTACGCACATAGATGATGTGGTTGCTGGTAACA TTTTAGCAATGGAGAATAGCGAAGCATCAGGCAGGCTAGTATGTTCAGGCCCAGTAGCTCACTGGTCACAGATTATTAAGATGCTCAGGGCCAAATATCC ATCCTATCCGTATGAAAACAAGTGTAGCAGCCAGGAAGGAGACAACATCCCACATAGCATGGATACCACTAAGATTGCTCAGTTAGGATTGCCCCCTTTC AAAACACATGAACAAATGTTTGATGACTGCATCAGGAGTCTCCAAGAGAAGGGATTTCTCTAA
AA sequence Show only first row Show all	>Potri.010G125400.1 pacid=42799359 polypeptide=Potri.010G125400.1.p locus=Potri.010G125400 ID=Potri.010G125400.1.v4.1 annot-version=v4.1 MPEYCVTGGTGFIAAYLVKSLLEKGHTVRITVRDPGNVRKVGFLQEFNGAKERLKIFKAELLEEGSFDEAIQGVDGVFHVAAPVLVPYSDRIQETLIDPC IKGTLNVLNSCLKASSVKRVVFTSSSSTVRYRDDTPQIFSLNESHWSDTEYCKRHNLWYAYAKTVAEKEAWRVSKENGIDLVSFIPSFVVGPLLAPEPNS TLLLIQSVVKGSRGEYPNMTVGFTHIDDVVAGNILAMENSEASGRLVCSGPVAHWSQIIKMLRAKYPSYPYENKCSSQEGDNIPHSMDTTKIAQLGLPPF KTHEQMFDDCIRSLQEKGFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68540		TKPR2, CCRL6	tetraketide alpha-pyrone reduc...		Potri.010G125400 [exp]	0	1
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Potri.010G035500 [exp]	5.91	0.9489	Pt-GST30.1
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G116800 [exp]	11.22	0.9555
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Potri.010G032800 [exp]	14.35	0.9533
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.006G141400 [exp]	20.29	0.9512
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G079700 [exp]	20.49	0.9442
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.019G001200 [exp]	21.00	0.9527
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G080200 [exp]	22.18	0.9294
					Potri.005G184800 [exp]	22.80	0.9465
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066400 [exp]	30.49	0.9418
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G072741 [exp]	31.30	0.9425

Compare expression of checked genes

Potri.010G125400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.