Plant FIBer expression Database

Potri.010G125700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G68552 37 / 0.0003 CPuORF53 conserved peptide upstream open reading frame 53 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G120050
[exp]
61 / 4e-13 AT1G25472 / conserved peptide upstream open reading frame 54 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G125700.1 pacid=42799929 polypeptide=Potri.010G125700.1.p locus=Potri.010G125700 ID=Potri.010G125700.1.v4.1 annot-version=v4.1
ATGTCGGCTGAGTTTGATTTGACTTTCGTTGGGGCGCAATCGCAGCTCTGGATTTCATTCTTCATTACAAAAGCTTTCACTCTTTGCGTCGGTGGTGTTG
TTTCTTGGTGCTTTTGCTTCTTCTGCTATATGCTTCTCTGCTGTTTCAAGCAGAGGTTGAATCTGGGGTACCCGGCTGTTTCGATGCCTTTGAAACCAAA
AAGGCCTTGTTCGGGAGTAGAGGCTTTCCATTTAAAGCGATTTTTTAATCTCTTCCTGTTCTTGAGAGGGGCTCTCACTTGA
AA sequence
>Potri.010G125700.1 pacid=42799929 polypeptide=Potri.010G125700.1.p locus=Potri.010G125700 ID=Potri.010G125700.1.v4.1 annot-version=v4.1
MSAEFDLTFVGAQSQLWISFFITKAFTLCVGGVVSWCFCFFCYMLLCCFKQRLNLGYPAVSMPLKPKRPCSGVEAFHLKRFFNLFLFLRGALT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G25472 CPuORF54 conserved peptide upstream ope... Potri.010G125700
[exp]
0 1
AT3G25890 AP2_ERF CRF11 cytokinin response factor 11, ... Potri.010G125600
[exp]
1.00 0.8802
AT4G38180 FAR1_related FRS5 FAR1-related sequence 5 (.1) Potri.011G145800
[exp]
3.00 0.8536
AT1G50660 unknown protein Potri.011G090100
[exp]
5.19 0.8220
AT5G12290 DGS1 dgd1 suppressor 1 (.1) Potri.009G022200
[exp]
6.92 0.8079
AT4G15080 DHHC-type zinc finger family p... Potri.016G018400
[exp]
7.34 0.8280
AT2G28930 APK1B protein kinase 1B (.1.2.3) Potri.009G031300
[exp]
9.48 0.8365 APK1.1
AT2G22870 EMB2001 embryo defective 2001, P-loop ... Potri.014G007450
[exp]
10.19 0.7976
AT4G13730 Ypt/Rab-GAP domain of gyp1p su... Potri.006G069300
[exp]
12.84 0.8086
AT1G14850 NUP155 nucleoporin 155 (.1) Potri.008G134800
[exp]
13.03 0.8205
AT3G14470 NB-ARC domain-containing disea... Potri.007G137101
[exp]
13.49 0.8252

Potri.010G125700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.