Plant FIBer expression Database

Potri.010G126000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G13360 151 / 1e-46 unknown protein
AT3G25870 101 / 4e-27 unknown protein
AT1G26920 40 / 0.0003 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G119800
[exp]
278 / 2e-96 AT1G13360 108 / 1e-29 unknown protein
Potri.015G054300
[exp]
108 / 2e-29 AT1G13360 87 / 3e-21 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041461
[exp]
187 / 1e-60 AT1G13360 111 / 5e-31 unknown protein
Lus10034310
[exp]
186 / 3e-60 AT1G13360 109 / 2e-30 unknown protein
PFAM info
Representative CDS sequence
>Potri.010G126000.1 pacid=42800057 polypeptide=Potri.010G126000.1.p locus=Potri.010G126000 ID=Potri.010G126000.1.v4.1 annot-version=v4.1
ATGGAAGAGCTGCAAAACAATAAAAAACGAGTCAGGGATGACTCGTTCGAGCTGGAGTTGGATTTGCCGGAGGTGAAGAAAATCAGAGAGGATTTATTGG
GCATCATCGATGATTCCGACCCTGACTCGCTGGGTCAGGATCTTGACTCCGTCATGAAGAGTTTTGAGCAAGAGATATCCGCGTATTCATCATCTCCGGT
GCCCGTCGTCGACCTGACGTCCGAATCCGGCGAGTCCCGGCCGGATCTAGGGTACCTTCTAGAAGCTTCTGATGATGAGCTCGGCTTGCCCCCGTCCATG
AATTCCTCGAGGGGGGAGGTCAAGGGTGAAGAAGAGACCGAGTTGGTCCGAGTTGACTCGGCGGAGTCATCCGGAATCGGTGGAGAGATATGGGGGTTTG
AGGACCAGATTCCGACTTATGACTCGTTCGGGCTGGGAGCAGGGGACGTTGATTATAATAGCAGGTATGTGGCGTTCGATGATGGGTTGTTCGAGTACTC
TAATGCTTGCTTCGACTCGACCGAGTTTGTGGATTTGTCGTGGCGGTTCGGCGGCATGCCGGCCGAGTAA
AA sequence
>Potri.010G126000.1 pacid=42800057 polypeptide=Potri.010G126000.1.p locus=Potri.010G126000 ID=Potri.010G126000.1.v4.1 annot-version=v4.1
MEELQNNKKRVRDDSFELELDLPEVKKIREDLLGIIDDSDPDSLGQDLDSVMKSFEQEISAYSSSPVPVVDLTSESGESRPDLGYLLEASDDELGLPPSM
NSSRGEVKGEEETELVRVDSAESSGIGGEIWGFEDQIPTYDSFGLGAGDVDYNSRYVAFDDGLFEYSNACFDSTEFVDLSWRFGGMPAE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G13360 unknown protein Potri.010G126000
[exp]
0 1
AT4G06536 SPla/RYanodine receptor (SPRY)... Potri.014G025000
[exp]
4.58 0.8590
AT5G07610 F-box family protein (.1) Potri.007G027200
[exp]
8.94 0.8400
AT4G29050 Concanavalin A-like lectin pro... Potri.003G196600
[exp]
13.07 0.8290
AT3G48520 CYP94B3 cytochrome P450, family 94, su... Potri.005G220700
[exp]
16.73 0.8262 Pt-CYP94.7
AT1G70530 CRK3 cysteine-rich RLK (RECEPTOR-li... Potri.010G043900
[exp]
20.92 0.8267
AT1G24140 Matrixin family protein (.1) Potri.015G103900
[exp]
22.44 0.8276
AT2G22860 ATPSK2 phytosulfokine 2 precursor (.1... Potri.002G116300
[exp]
22.73 0.8138
AT1G32790 CID11 CTC-interacting domain 11 (.1.... Potri.012G022000
[exp]
22.95 0.7926
AT5G25930 Protein kinase family protein ... Potri.006G235800
[exp]
28.46 0.8171
AT2G19460 Protein of unknown function (D... Potri.006G147700
[exp]
29.66 0.8271

Potri.010G126000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.