Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68570 901 / 0 Major facilitator superfamily protein (.1) AT3G54140 483 / 1e-165 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 483 / 3e-165 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 475 / 4e-162 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 448 / 1e-151 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT1G69870 416 / 2e-138 NRT1.7 nitrate transporter 1.7 (.1) AT3G16180 400 / 1e-132 Major facilitator superfamily protein (.1) AT2G02020 395 / 2e-131 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT1G52190 389 / 2e-128 Major facilitator superfamily protein (.1) AT1G18880 387 / 6e-128 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G034000 [exp] 669 / 0 AT1G68570 656 / 0.0 Major facilitator superfamily protein (.1) Potri.016G032000 [exp] 613 / 0 AT1G68570 590 / 0.0 Major facilitator superfamily protein (.1) Potri.006G033900 [exp] 603 / 0 AT1G68570 607 / 0.0 Major facilitator superfamily protein (.1) Potri.016G111800 [exp] 479 / 4e-164 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 479 / 1e-163 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.006G096800 [exp] 468 / 1e-159 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 464 / 4e-158 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.011G120000 [exp] 461 / 9e-157 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.009G042400 [exp] 457 / 2e-155 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041466 [exp] 903 / 0 AT1G68570 850 / 0.0 Major facilitator superfamily protein (.1) Lus10017817 [exp] 629 / 0 AT1G68570 637 / 0.0 Major facilitator superfamily protein (.1) Lus10034305 [exp] 583 / 0 AT1G68570 681 / 0.0 Major facilitator superfamily protein (.1) Lus10018838 [exp] 566 / 0 AT1G68570 571 / 0.0 Major facilitator superfamily protein (.1) Lus10021132 [exp] 474 / 9e-162 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10030947 [exp] 474 / 2e-161 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10035516 [exp] 468 / 2e-159 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10040099 [exp] 467 / 6e-159 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 453 / 2e-153 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 443 / 2e-149 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.010G126300.1 pacid=42800210 polypeptide=Potri.010G126300.1.p locus=Potri.010G126300 ID=Potri.010G126300.1.v4.1 annot-version=v4.1 ATGGAAAGGATGGAGAGCAAAGGTTGCCGCAGGAAAAGGCAGAATGGTGGATTGGTTACAATGCCCTTTATATTTGCAAATGAGGCTTGTGAGAAGTTGG CGGTGGTGGGGTTCAGTACCAATATGATCAGCTACCTGACAACACAGCTCCATATGCCATTGACCAAAGCAGCCAACACCCTCACCAACTTCGGAGGAAC TTCAAGCTTAACACCGTTGCTCGGTGCCTTCATGGCCGACGCGTATGCTGGCCGGTTCTGGACTATAACAGTTGCTTCCATAATATACCAAATAGGCATG ATAAGCTTAACATTATCAGCAATTCTTCCACATCTAAGGCCACCGCCATGTAAATTAGGAGAGCAAGTGTGCCAAGAAGCTGATACAGGGCAACTAGCAA TCCTATATGCATCTCTCCTGCTAGGAGCCTTAGGATCAGGCGGGATCCGACCGTGTGTCGTCGCATTCGGAGCAGACCAATTCGATGAGTCGGACCCTAA GCAGACAACAAAGACATGGAGATACTTCAATTGGTACTATTTTGTCATGGGAGTATCTATCCTTGTGGCTGTGACAGTGCTTGTCTACATTCAGGACAAC ATTGGTTGGGGTTGGGGTCTTGGAATTCCAACCATAGCAATGTTTTTCTCAATTATTGCTTTTATTGGTGGATACCCACTTTACCGGAACCTGGATCCAG CCGGAAGTCCATTTACCAGATTGTTACAAGTGTCTGTGGCTGCATTTAGGAAGAGGAAGCTGGCCATGGTTTCGGATCCTGAGTTATTATACCAGAACGA TGAGCTTGATGCACCCATTTCTATTGGTGGAAAGCTTCTACACACTATACATATGAAATTTCTTGATAAGGCTGCAATTGTGGTTGAAGAAGATAATTTC AAACAAGGCCAAGCACCCAACCTTTGGAGACTAAATACAGTTCACAGAGTTGAAGAACTCAAATCTATCATCAGAATGGGACCAATATGGGCAGCAGGAA TTCTCCTGATCACAGCCTATGCCCAGCAAAACACATTTTCCCTACAACAAGCCAAGTCCATGGACAGGCATCTCACAAAATCCTTTCAAATTCCAGCAGG TTCAATGTCTGTCTTCACCATGACCTCCATGCTCACCACAATAGCCTTTTATGATCGCATTTTGGTTCCTGTTGCAAGTAAATTCACAGGGCTTGAACGT GGTATAAGCTTTCTGCATCGGATGGGAATTGGTTTTGTCATATCAATATTTGCCACTCTAGTTGCTGGCTTCGTTGAAATCAAGCGAAAACATGTTGCTT CAGCTCATGGTCTTATCAATTCTCAACAGCCTATTCCTATCCCGGTCTTTTGGCTTGTGCCACAATATTGTCTTCACGGAATAGCTGAAGCTTTTATGTC AATTGGGCATTTAGAGTTCTTCTATGATCAAGCACCAGAAAGTATGAGAAGCAGTGCTATGGCACTATTTTGGACTGCGATTTCAGTTGGGAATTATGCA AGCACACTTTTGGTCACCTTAGTGCATAAGTTTAGTGCTGGTTCTGATGGATCAAATTGGCTTCCAGATGATAATCTGAACAAAGGAAAATTGGAGTACT TTTACTGGTTGATCACGTTATTGCAGGTTGCTAATCTTATTTACTACCTATTTTGTGCAAAGATGTATACTTTTAAGCCAATTCAAGTCCACAACAAAGA AATCAGTGACTCTAAAGAAAGTGGAGTAGAGCTCGCAAACAAGGTTTAG
AA sequence Show only first row Show all	>Potri.010G126300.1 pacid=42800210 polypeptide=Potri.010G126300.1.p locus=Potri.010G126300 ID=Potri.010G126300.1.v4.1 annot-version=v4.1 MERMESKGCRRKRQNGGLVTMPFIFANEACEKLAVVGFSTNMISYLTTQLHMPLTKAANTLTNFGGTSSLTPLLGAFMADAYAGRFWTITVASIIYQIGM ISLTLSAILPHLRPPPCKLGEQVCQEADTGQLAILYASLLLGALGSGGIRPCVVAFGADQFDESDPKQTTKTWRYFNWYYFVMGVSILVAVTVLVYIQDN IGWGWGLGIPTIAMFFSIIAFIGGYPLYRNLDPAGSPFTRLLQVSVAAFRKRKLAMVSDPELLYQNDELDAPISIGGKLLHTIHMKFLDKAAIVVEEDNF KQGQAPNLWRLNTVHRVEELKSIIRMGPIWAAGILLITAYAQQNTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMTSMLTTIAFYDRILVPVASKFTGLER GISFLHRMGIGFVISIFATLVAGFVEIKRKHVASAHGLINSQQPIPIPVFWLVPQYCLHGIAEAFMSIGHLEFFYDQAPESMRSSAMALFWTAISVGNYA STLLVTLVHKFSAGSDGSNWLPDDNLNKGKLEYFYWLITLLQVANLIYYLFCAKMYTFKPIQVHNKEISDSKESGVELANKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68570			Major facilitator superfamily ...		Potri.010G126300 [exp]	0	1
AT5G04140		GLS1, GLUS, GLU...	FERREDOXIN-DEPENDENT GLUTAMATE...		Potri.006G038400 [exp]	3.74	0.8965	Pt-GLU1.2
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Potri.006G213400 [exp]	4.24	0.8340	Pt-AFC1.2
AT2G41190			Transmembrane amino acid trans...		Potri.006G038700 [exp]	6.92	0.8598
AT1G25480			Aluminium activated malate tra...		Potri.008G118600 [exp]	7.74	0.8259
AT5G17860		CAX7	calcium exchanger 7 (.1)		Potri.013G065800 [exp]	11.87	0.8676
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Potri.017G043100 [exp]	13.26	0.8684
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.015G023800 [exp]	17.49	0.8529	Pt-ATMRP14.3
AT5G23980		FRO2, ATFRO4, F...	ferric reduction oxidase 4 (.1...		Potri.017G142800 [exp]	22.49	0.8181	FRO2.1
AT5G03650		SBE2.2	starch branching enzyme 2.2 (....		Potri.006G115100 [exp]	31.30	0.8425
AT5G42390		SPP	stromal processing peptidase, ...		Potri.014G149200 [exp]	34.05	0.8543

Compare expression of checked genes

Potri.010G126300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.