Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68580 478 / 1e-160 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT5G55600 306 / 2e-94 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein AT4G17330 72 / 1e-12 ATG2484-1 G2484-1 protein (.1) AT1G09320 63 / 3e-10 agenet domain-containing protein (.1) AT1G11420 61 / 2e-09 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) AT1G26540 59 / 8e-09 Agenet domain-containing protein (.1) AT1G03300 53 / 5e-07 ATDUF1 DOMAIN OF UNKNOWN FUNCTION 724 1 (.1) AT2G47230 52 / 9e-07 ATDUF6 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) AT3G06520 51 / 2e-06 agenet domain-containing protein (.1) AT1G06340 48 / 2e-06 Plant Tudor-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G119400 [exp] 1060 / 0 AT1G68580 459 / 9e-154 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.006G017400 [exp] 317 / 4e-98 AT5G55600 493 / 1e-166 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.001G365800 [exp] 307 / 1e-94 AT5G55600 663 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.016G007500 [exp] 300 / 1e-91 AT5G55600 491 / 7e-166 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.003G077600 [exp] 81 / 2e-15 AT4G17330 773 / 0.0 G2484-1 protein (.1) Potri.013G006900 [exp] 71 / 7e-13 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.001G157300 [exp] 72 / 1e-12 AT4G17330 726 / 0.0 G2484-1 protein (.1) Potri.005G011100 [exp] 66 / 2e-11 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.009G072600 [exp] 60 / 5e-09 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007115 [exp] 293 / 6e-89 AT5G55600 606 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Lus10003906 [exp] 288 / 2e-87 AT5G55600 455 / 3e-152 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Lus10016606 [exp] 286 / 7e-86 AT5G55600 604 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Lus10007793 [exp] 81 / 2e-15 AT4G17330 508 / 1e-147 G2484-1 protein (.1) Lus10004730 [exp] 81 / 2e-15 AT4G17330 772 / 0.0 G2484-1 protein (.1) Lus10000353 [exp] 69 / 9e-12 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10000615 [exp] 69 / 1e-11 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10017088 [exp] 64 / 3e-10 AT3G06520 283 / 1e-90 agenet domain-containing protein (.1) Lus10031429 [exp] 58 / 1e-08 AT1G09320 131 / 2e-33 agenet domain-containing protein (.1) Lus10037805 [exp] 57 / 2e-08 AT3G06520 271 / 9e-86 agenet domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01426 [poplar] [flax] BAH BAH domain CL0049 [poplar] [flax] Tudor PF05641 [poplar] [flax] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Potri.010G126700.1 pacid=42799816 polypeptide=Potri.010G126700.1.p locus=Potri.010G126700 ID=Potri.010G126700.1.v4.1 annot-version=v4.1 ATGGAGAGGTCGGGGACTCGGTCGCCGCCGGAGAAGGCTACGTCGCTGGGGTACGTGAGCTGGGAGGAGGTGTACGTATCCAGCGACAGAGGGAGGAGAG AGGTGCAGTATTATCTGAAGAGAAACGACGGTGGAAAAGACCTGGCAATTACAGGGAAAGAGAAGAGCTCACGGCACATGTCTTATTATTTTGAAATTAG GAACCGGTCGAATTTGTTTCCTATGGCACCCTCTCTGAAGCCGAAGTCAAGAAGAGAGGTTATTGACTGGCTCGATTCAATTGTTTCAGGTTCCCTTCTA CAAGCACCAATCTTTCAAGCAGGCTCCTTGGATAACAGTGATGCTTCTCAGTTCGATATGGAAATATTTAAGGATATTCAGTCGCAAAAGCTGGGGCATT ATTCTTCAGAATTTTTGTGGTTAGGTTCTCCGTGGGTTTGCAGGAAGAAAAGAAAGCATTACGAGTCTTTTTACCGGAATGGTGTCAAAATTTCTATTCA TGACTTTGTTTATGTCTTAGCCGAGGAGGATAAACGACTCATTGCATACTTGGAAGACCTCTACGAGGACTTGAAAGGGAACAAAATGGTTATGGTACGA TGGTTTCACAAAATTGATGAGGTTGGTATTGTTTTGCCTCACAATTTTAATGACAGAGAGATTTTCTTTTCTCTGTGTCTTCAAGATCTCAATATCGAAT GCATAGATGGAGTGGCCACTGTTTTGAGTCCTCAGCATTTCAAGAAATTCTTAAATGAGGCTGTATGTACTAGGTTCAATGCTTTTGTTTGTGACAAGCT GTTTGACAATGAAGATGTTAATCACTTTGACATTACTCAAGTTGAAGGTTACTGGAGACAGGAAATTCTTGGGTATTTGAGTGTCCTTCCTTCAAATTGT CTGGCGAATTCCCAATATCCAGGCAATGGCTTGAGAGGTGAAGGACATGACACTAATGCTAGTAGGATGAGACCTAAGAAGAGGCTTCGCAGATTAAAAG ACAATGGCGATTTTTGCATTGTCAGAAAAGAATCAACTACTGCTAGGTGTTTTAACATGCAAAACCTGCATAACAGTTGGATTGACAGCAAAACTGGAAA TGAGATATGCAGTCAAAGGGGAGAAGATCATACTGCCTTTTTGTCCACAACAGAGGTTATGCAAAATCCTCAAAATCTGCATGTTGACTCTGAAGTTGAA GTGCTTTCTCAGGATAGTGGTATTAGAGGTTGTTGGTTCCGAGCTTCGATAATTAAGAAGCACAAAGATAAGGTGAAGGTGAGATATCAAGATATCAGTG ATGCAGCTGACGAAGCCAATAAACTAGAGGAATGGGTTTTGGCCTCTAGGGTTGCTGCTCCTGACCAATTAGCTATCCGGATTGGTGGAAGGACTGTTGT CCGCCCCACCCCCCAGTTCAATAAAGAGCGAGCTGCATCAGTTGCTGATGTGGGGACTGCTGTAGATGCTTGGTGGAATGATGCTTGGTGGGAAGGCGTC GTTGTCCAAAAAGAATCTGAAGATAGAATCCATGTCTTTTTCCCAGGAGAAAAGAAGGAATCAGTTTTCTGTTGCTCTGACCTAAGACTTTCCCAAGAGT GGGTGGGAAATGAGTGGATACATATCGAGGGACGACCAGACATTCTGTCCCATTTATCATCCTGCTTGGAAAGAAAGCAATTAAAGTTCAGATCTGATGA GAGTAAATTGGCCCAGGCTGCTATTCCTGATTCCAGGCAATCAGGAAAAGCGAACCCTGGATGTATTGATTATTCTTTAGACTCTGGATGTGATATGGGA AAAGAATTGAAGGTAGTTCCAGATCTTTCAAAGGATAATTTGCTAGCCCAGTTGAGGTGGAGGTCAATCAAGAAGAGAAGACGTGGTAGTGGGAGTTCTG GCCATAAGATGCACCTCTACAATAATGGGGGTCGAAGGTTATCAGAAGTCATCGGATCCAATTCAGGTGAAAGATATTTGATTCCAACTGCCCTGAAAGT TGATCATGAGAACTGCAAGTACATGGGGGATTCTCTCTTTACCTCTGCTGTTGTGCAGCCTCTATCAAGCTTGGTTATGTCTAGATGA
AA sequence Show only first row Show all	>Potri.010G126700.1 pacid=42799816 polypeptide=Potri.010G126700.1.p locus=Potri.010G126700 ID=Potri.010G126700.1.v4.1 annot-version=v4.1 MERSGTRSPPEKATSLGYVSWEEVYVSSDRGRREVQYYLKRNDGGKDLAITGKEKSSRHMSYYFEIRNRSNLFPMAPSLKPKSRREVIDWLDSIVSGSLL QAPIFQAGSLDNSDASQFDMEIFKDIQSQKLGHYSSEFLWLGSPWVCRKKRKHYESFYRNGVKISIHDFVYVLAEEDKRLIAYLEDLYEDLKGNKMVMVR WFHKIDEVGIVLPHNFNDREIFFSLCLQDLNIECIDGVATVLSPQHFKKFLNEAVCTRFNAFVCDKLFDNEDVNHFDITQVEGYWRQEILGYLSVLPSNC LANSQYPGNGLRGEGHDTNASRMRPKKRLRRLKDNGDFCIVRKESTTARCFNMQNLHNSWIDSKTGNEICSQRGEDHTAFLSTTEVMQNPQNLHVDSEVE VLSQDSGIRGCWFRASIIKKHKDKVKVRYQDISDAADEANKLEEWVLASRVAAPDQLAIRIGGRTVVRPTPQFNKERAASVADVGTAVDAWWNDAWWEGV VVQKESEDRIHVFFPGEKKESVFCCSDLRLSQEWVGNEWIHIEGRPDILSHLSSCLERKQLKFRSDESKLAQAAIPDSRQSGKANPGCIDYSLDSGCDMG KELKVVPDLSKDNLLAQLRWRSIKKRRRGSGSSGHKMHLYNNGGRRLSEVIGSNSGERYLIPTALKVDHENCKYMGDSLFTSAVVQPLSSLVMSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68580			agenet domain-containing prote...		Potri.010G126700 [exp]	0	1
AT1G55340			Protein of unknown function (D...		Potri.019G035300 [exp]	1.00	0.8153
AT5G59550			zinc finger (C3HC4-type RING f...		Potri.006G087800 [exp]	2.82	0.8018
AT1G20980	SBP	ATSPL14, SPL1R2...	squamosa promoter binding prot...		Potri.002G002400 [exp]	9.79	0.7891
AT5G57035			U-box domain-containing protei...		Potri.006G147000 [exp]	10.81	0.7703
AT3G59430			unknown protein		Potri.017G029800 [exp]	11.40	0.7663
AT1G17450			B-block binding subunit of TFI...		Potri.001G170001 [exp]	14.28	0.7760
AT5G52530			dentin sialophosphoprotein-rel...		Potri.004G079000 [exp]	14.49	0.7756
AT4G11790			Pleckstrin homology (PH) domai...		Potri.001G111100 [exp]	15.49	0.7647
AT3G18620			DHHC-type zinc finger family p...		Potri.007G070600 [exp]	24.00	0.7026
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.001G041800 [exp]	24.49	0.7787

Compare expression of checked genes

Potri.010G126700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.