Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25840 728 / 0 Protein kinase superfamily protein (.1.2) AT1G13350 662 / 0 Protein kinase superfamily protein (.1.2) AT3G53640 601 / 0 Protein kinase superfamily protein (.1) AT2G40120 176 / 3e-46 Protein kinase superfamily protein (.1) AT1G73460 176 / 1e-44 Protein kinase superfamily protein (.1) AT1G73450 176 / 1e-44 Protein kinase superfamily protein (.1) AT4G32660 166 / 2e-44 AME3 Protein kinase superfamily protein (.1.2.3) AT4G24740 165 / 6e-44 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT3G17750 168 / 2e-42 Protein kinase superfamily protein (.1) AT3G53570 158 / 3e-41 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G119100 [exp] 947 / 0 AT3G25840 689 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G069000 [exp] 177 / 5e-46 AT2G40120 607 / 0.0 Protein kinase superfamily protein (.1) Potri.006G244400 [exp] 171 / 5e-46 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G188400 [exp] 177 / 7e-46 AT2G40120 576 / 0.0 Protein kinase superfamily protein (.1) Potri.012G039700 [exp] 174 / 3e-44 AT1G73460 1343 / 0.0 Protein kinase superfamily protein (.1) Potri.016G079900 [exp] 163 / 4e-43 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.015G033400 [exp] 168 / 3e-42 AT1G73460 1356 / 0.0 Protein kinase superfamily protein (.1) Potri.006G213400 [exp] 160 / 4e-42 AT3G53570 720 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.015G085700 [exp] 158 / 1e-41 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021688 [exp] 778 / 0 AT3G25840 736 / 0.0 Protein kinase superfamily protein (.1.2) Lus10035031 [exp] 535 / 2e-173 AT3G25840 465 / 6e-151 Protein kinase superfamily protein (.1.2) Lus10040203 [exp] 180 / 2e-46 AT2G40120 590 / 0.0 Protein kinase superfamily protein (.1) Lus10028283 [exp] 177 / 4e-46 AT2G40120 587 / 0.0 Protein kinase superfamily protein (.1) Lus10031902 [exp] 168 / 3e-42 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1) Lus10026360 [exp] 166 / 1e-41 AT1G73460 680 / 0.0 Protein kinase superfamily protein (.1) Lus10043309 [exp] 158 / 2e-41 AT4G24740 730 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10042297 [exp] 165 / 3e-41 AT1G73450 1335 / 0.0 Protein kinase superfamily protein (.1) Lus10024431 [exp] 158 / 3e-41 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10025301 [exp] 157 / 7e-41 AT3G53570 726 / 0.0 FUS3-complementing gene 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.010G126900.12 pacid=42796851 polypeptide=Potri.010G126900.12.p locus=Potri.010G126900 ID=Potri.010G126900.12.v4.1 annot-version=v4.1 ATGGCCAGCGATTCCGATGCCTCTCATCGCAAGCACCGACGATCTTCCTCCGATGACGAGGCGGAGAAGTCCTCGAAACGCCACAAACATCGTCACCATC ACCACCGACATCGCCACTGCCGTAGCAAGAAGCACGGAGAGGATACAAAACAAGGCGGTGAAGACATCGTTCCTGCTACTCTTCCTCCTCCGGTTCCTGT TGCGAATAGTAATGGAGCTGATAATGATGACGTGGAGGAAGGGGAGATCCTTGAGGAGGAAGGTTCTGGTGGCGTCGATGTCGAGGCCAATGAATTGCAT GAAGAAGTACCAGATTCTCAAAATCTGGGATTTGACAAGAGTGACATTGGTTTTGTGAATAATCATCCAGTTGTTGATCAGTTTGACAATGAGGTCTGCC TTCGAAGAGATTCTAGGGCTGAGCTTCGAGATGAGCTAGTTTCTAAAATTGACTCAGAGGATCTTGCCAATGGTAATTTAGGTCGTGAATACCATAAAGA TGATAAGAAGAGGCATGTGGAATCTAGGTCCCCTTCAAAGGGAAGTAACAAGCAAAAAAGTAACCTGGATATTACAACTGAGGGTGATGATAGCAAATTA AGGGATTGGAGAAAGTCATCATCTTCTGAAAGCAGTGAGAATAGGCATAAGAGGGCACAATCACCTTCGCGTGAAAGGTACCATTATGAGATTCATTCTA GGAGTAGATCAATGTCACGAGATCTAGTTAGGGAGAGATCGCGTTCTCGTAGCCTTATTGAATACAAGGATCTTTTGACAAGAAAAAGACACCATGACAG GGTTGATTATGACTCTGATGGTGAAAGAATGTCTCGAAACAGCAGGGTTCTGCGACATGGCAGTAGAGATTCAGTGAGAAATGTGGATAGGGAAAGCAGT GTTAGTTACAACAAGTCTTTTGATGGAGAGGATCGGTATCACAACAAGAATTCACAGGATAGAGAGAGGAGCAAGGAGAGGGAACAACGAAGAGAGAAGG AACAAGAGAGATGCAGGGAGAGGGAGGTGGATCGGGTTAGGAGAAGGGGGATGGAACATGAGAGGAGCAGGGAAAGCTTCCAGAGAAGAAGGGAGATGGA ACATGAGAGGAGTAGGAAAAGCGACCATAGAAGGGAGAAGGATCAATATGGGGAGGTAGACTGGGAAAGGAGGAGGGAGAAAGAACAGGGGAGGAGTAGG GACATGGTGGAGGAGATAGATAGAAAAAGACAGCAGGAAACAGATTTGAGCAAACACAAAAATATGCATGGGGCTAGTGACAGAGATAGAGACAGGGAGA GAGAAAGGGAGAAGGATAGGGATAGGTACAGGGAAAGGGATAGAGTTAGGGACCATGATCGTGGGAACGAACAGGAAAGGGAGAGGCGAAATGACAGGGA TAGGGAGAAATCTAGGGATAAGAGTGATTCAGAAAAACTCTATAATATCAACAGCAATTCTTTTGGACAGGGAAGAGACAATCTAAAGAGAGATGAAGAT GAACAGGATGATTTTGAAAAAAGGATGGCATTAAAATTAGCTGAACAGGAAGAGGAAGATCTCAATAGAATAAAGGAGGAGAGTAGAAAGCGAAGGGAAG CCATTCTTGAAAAATATAGAAATCAGCATTTACAGCAGCAGAATGAGTCTCGATCAGAAGATGCAGACAAAGATAAGGAGCCTTTAGAAGGTCCTGGTAA CTCAGCAGCAACCGACAATGTTGCTCCAGAAACTCTCGATGGTAGGACAGATGGTGCTGACGTTTATGTTGCTGAGACATTATTTTCTGTTGGGAAATCA CCTTCACAAAATGGAATACAAGTTACTTCTGAGAGGACTTCAGGTGCTGCAGGGCTTGGAGAAGGTTCTCCGAAGAGTGAGAGATCAGATGAAAAATATT GTGATGATATTTTTGGAGAGACGCCTGTTGGAGTTCGTAAATCAGGTAAAGGAGAAGGTTTGCCAATTGTGAGGAGTGGTCTCCATGACAATTGGGATGA TCCTGTAGGGTATTATAGCTACCGATTTGGAGAAGTACTTGATGGTCGATATGAAATTGTTGCTGCTCATGGAAAAGGTGTCTTTTCTACAGTAGTTCGT GCGAAGGATCTGAAGGCTGGCATTGATGAACCTGAAGAAGTGGCTATAAAAATTATACGTAACAATGAAACAATGCGCAAGGCTGGGGATACAGAGGTTT CAATATTGAAGAAATTAGCAGGTCAAGATCCAGAGAACAAGCGTCATTGCGTTCGTTTTCTTTCAAGTTTCAAGTATAGAAATCATCTTTGTTTAGTTTT TGAATCTCTTCACATGAACCTGCGTGAGGTCTTAAAAAAGTTTGGTCGAGATATTGGCCTTAAACTAACTGCTGTTAGAGCATATGCAAAGCAGCTTTTT ATTGCTCTGAAGCATCTAAGAAACTGTGGTGTTCTTCACAGTGATATAAAGCCTGATAATATGCTGGTAAATGAGGCAAAAAATGTGCTGAAGCTTTGTG ATTTTGGTAATGCGATGTTTTCTGGTAAAAATGAAATTACACCATACCTTGTAAGCCGGTTTTATCGTGCTCCTGAAATAATTCTTGGTTTGACGTATGA TCATCCAATGGATGTGTGGTCTGTTGGTTGCTGCTTGTATGAGCTTTATACTGGAAAAGTTCTATTTCCTGGTTCTACAAACAATGACATGCTACGACTC CACATGGAATTGAAGGGCCCTTTCCCAAAGAAGATGCTTAAGAAGGGTGCATTTGTTGACCAACATTTTGACCGTGATTCGAATTTTCATGCTACAGAGG AAGATCCTGTCACTAAAAAGATTATGAAAAAGATTATTGTGAACATAAAGGCAAAAGATATTGGATCTATTATTTCGGGTTCTCCTGGTGAGGATCCAAA GATGTTAGCAAACTTTAAAGATCTTCTAGAAAAACTTTTTGTGTTGGATCCTGAGAAGAGGATGACAGTTAATCAAGCACTAGCTCACCCATTCATCACG GGCAAGTGA
AA sequence Show only first row Show all	>Potri.010G126900.12 pacid=42796851 polypeptide=Potri.010G126900.12.p locus=Potri.010G126900 ID=Potri.010G126900.12.v4.1 annot-version=v4.1 MASDSDASHRKHRRSSSDDEAEKSSKRHKHRHHHHRHRHCRSKKHGEDTKQGGEDIVPATLPPPVPVANSNGADNDDVEEGEILEEEGSGGVDVEANELH EEVPDSQNLGFDKSDIGFVNNHPVVDQFDNEVCLRRDSRAELRDELVSKIDSEDLANGNLGREYHKDDKKRHVESRSPSKGSNKQKSNLDITTEGDDSKL RDWRKSSSSESSENRHKRAQSPSRERYHYEIHSRSRSMSRDLVRERSRSRSLIEYKDLLTRKRHHDRVDYDSDGERMSRNSRVLRHGSRDSVRNVDRESS VSYNKSFDGEDRYHNKNSQDRERSKEREQRREKEQERCREREVDRVRRRGMEHERSRESFQRRREMEHERSRKSDHRREKDQYGEVDWERRREKEQGRSR DMVEEIDRKRQQETDLSKHKNMHGASDRDRDREREREKDRDRYRERDRVRDHDRGNEQERERRNDRDREKSRDKSDSEKLYNINSNSFGQGRDNLKRDED EQDDFEKRMALKLAEQEEEDLNRIKEESRKRREAILEKYRNQHLQQQNESRSEDADKDKEPLEGPGNSAATDNVAPETLDGRTDGADVYVAETLFSVGKS PSQNGIQVTSERTSGAAGLGEGSPKSERSDEKYCDDIFGETPVGVRKSGKGEGLPIVRSGLHDNWDDPVGYYSYRFGEVLDGRYEIVAAHGKGVFSTVVR AKDLKAGIDEPEEVAIKIIRNNETMRKAGDTEVSILKKLAGQDPENKRHCVRFLSSFKYRNHLCLVFESLHMNLREVLKKFGRDIGLKLTAVRAYAKQLF IALKHLRNCGVLHSDIKPDNMLVNEAKNVLKLCDFGNAMFSGKNEITPYLVSRFYRAPEIILGLTYDHPMDVWSVGCCLYELYTGKVLFPGSTNNDMLRL HMELKGPFPKKMLKKGAFVDQHFDRDSNFHATEEDPVTKKIMKKIIVNIKAKDIGSIISGSPGEDPKMLANFKDLLEKLFVLDPEKRMTVNQALAHPFIT GK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25840			Protein kinase superfamily pro...		Potri.010G126900 [exp]	0	1
AT1G20920			P-loop containing nucleoside t...		Potri.002G003600 [exp]	1.41	0.9664
AT1G20920			P-loop containing nucleoside t...		Potri.005G257400 [exp]	2.44	0.9564
AT3G15120			P-loop containing nucleoside t...		Potri.011G141400 [exp]	3.46	0.9506
AT4G35540			zinc ion binding;transcription...		Potri.004G084700 [exp]	4.24	0.9470
AT3G25840			Protein kinase superfamily pro...		Potri.008G119100 [exp]	4.47	0.9473
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Potri.010G166100 [exp]	5.47	0.9346
AT2G27980			Acyl-CoA N-acyltransferase wit...		Potri.004G217600 [exp]	6.48	0.9407
					Potri.003G148601 [exp]	7.34	0.9396
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Potri.005G164100 [exp]	8.94	0.9398
					Potri.017G058200 [exp]	8.94	0.9201

Compare expression of checked genes

Potri.010G126900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.