Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13330 145 / 4e-44 AHP2 Arabidopsis Hop2 homolog (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G118800 [exp] 162 / 1e-50 AT1G13330 357 / 2e-126 Arabidopsis Hop2 homolog (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021690 [exp] 52 / 5e-09 AT1G13330 190 / 4e-62 Arabidopsis Hop2 homolog (.1) Lus10035033 [exp] 52 / 9e-09 AT1G13330 192 / 9e-63 Arabidopsis Hop2 homolog (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF07106 [poplar] [flax] TBPIP TBPIP/Hop2 winged helix domain
Representative CDS sequence Show only first row Show all	>Potri.010G127101.1 pacid=42798037 polypeptide=Potri.010G127101.1.p locus=Potri.010G127101 ID=Potri.010G127101.1.v4.1 annot-version=v4.1 ATGGCTCCCAAATCCGATATCACCGAAGCTATCGTGCTCAACTTCGTGAATGAGTTCAACCTAAAAAAGGCAGCAATACAGAAAACACTGGGTAATCTTT CGGATAATGGGAAGATGTCGTTTAAGGAGTATGGTAAGCAGAAGATACATCTTGCTCGGAAAGATCATTTTAACATTCCCAACAGCCAAGAGCTTAATCA GATGAAGGAAGAAAATGCTAAACTGCAGCAACAGCTGGATGAGCAGAAGAGAGCTATTAGTGAGGTTGAGGGCGGTCTGTTCTATACGCGGCCGTTATGT GTTCCAAAGAAGAGAAGTACTGCTAACAAAAATATGATGGGAGCTGGGTTGATGTACACTATTGCAGAAATTAGAACCTTGGAGTCGAATCTGACACTGC AACAGATACACGATAAAGAAGCCAAGCTGAGGAAGAGGGTAAATTACGCGTGGGCTTTTGAAGTGCTTCTTTAG
AA sequence Show only first row Show all	>Potri.010G127101.1 pacid=42798037 polypeptide=Potri.010G127101.1.p locus=Potri.010G127101 ID=Potri.010G127101.1.v4.1 annot-version=v4.1 MAPKSDITEAIVLNFVNEFNLKKAAIQKTLGNLSDNGKMSFKEYGKQKIHLARKDHFNIPNSQELNQMKEENAKLQQQLDEQKRAISEVEGGLFYTRPLC VPKKRSTANKNMMGAGLMYTIAEIRTLESNLTLQQIHDKEAKLRKRVNYAWAFEVLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13330		AHP2	Arabidopsis Hop2 homolog (.1)		Potri.010G127101 [exp]	0	1
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Potri.004G172500 [exp]	2.00	0.8168
AT1G13340			Regulator of Vps4 activity in ...		Potri.010G127000 [exp]	4.69	0.8510
AT2G42410	C2H2ZnF	ATZFP11, ZFP11	zinc finger protein 11 (.1)		Potri.005G221400 [exp]	6.00	0.8164
AT3G57810			Cysteine proteinases superfami...		Potri.010G057750 [exp]	8.94	0.8050
AT5G43230			unknown protein		Potri.010G057700 [exp]	10.95	0.8140
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Potri.010G000800 [exp]	13.41	0.7813
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014374 [exp]	17.46	0.8167
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Potri.005G186150 [exp]	19.07	0.7234
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Potri.001G219200 [exp]	19.89	0.8048
AT4G14145			unknown protein		Potri.008G038500 [exp]	23.10	0.6461

Compare expression of checked genes

Potri.010G127101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.