Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68590 189 / 1e-61 Ribosomal protein PSRP-3/Ycf65 (.1.2) AT5G15760 157 / 6e-49 Ribosomal protein PSRP-3/Ycf65 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G118700 [exp] 330 / 3e-117 AT1G68590 187 / 4e-61 Ribosomal protein PSRP-3/Ycf65 (.1.2) Potri.004G101000 [exp] 147 / 2e-45 AT1G68590 136 / 3e-41 Ribosomal protein PSRP-3/Ycf65 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034302 [exp] 201 / 3e-66 AT1G68590 173 / 2e-55 Ribosomal protein PSRP-3/Ycf65 (.1.2) Lus10035036 [exp] 194 / 8e-64 AT1G68590 181 / 9e-59 Ribosomal protein PSRP-3/Ycf65 (.1.2) Lus10041469 [exp] 192 / 8e-63 AT1G68590 175 / 2e-56 Ribosomal protein PSRP-3/Ycf65 (.1.2) Lus10021693 [exp] 192 / 9e-63 AT1G68590 178 / 9e-58 Ribosomal protein PSRP-3/Ycf65 (.1.2) Lus10017590 [exp] 127 / 3e-37 AT5G15760 116 / 3e-33 Ribosomal protein PSRP-3/Ycf65 (.1) Lus10033551 [exp] 124 / 7e-36 AT5G15760 115 / 3e-33 Ribosomal protein PSRP-3/Ycf65 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04839 [poplar] [flax] PSRP-3_Ycf65 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
Representative CDS sequence Show only first row Show all	>Potri.010G127300.1 pacid=42797545 polypeptide=Potri.010G127300.1.p locus=Potri.010G127300 ID=Potri.010G127300.1.v4.1 annot-version=v4.1 ATGTTATCCGTGGCATTTCAGTGTGGTTTCAGTAATGTGTTCACAAATTCTTCATTGCCTTGTCAGACCCCTAGTTGCAAAACATTCAAAGCCACATTTT CCACCAATCCCAAACCAAATCTGATACATTCTTCAACATTTCTTGACCGGAAAAGGAAACGCGTTTCAAGAAACCAAAGATACACAACTTTCGCCGCCCC AGAAGCTCTCACAGTTGAAACACCCATTGACACTCCACCTTCCACTGAAACAGAAGAATCCATCCCCGCCCAAGGAACCGAGAAAGCTGAGGTGTTAGTA AAACAAGTGGAGAAACCAAGGTTGGTGTTGAAGTTTATATGGATGGAGAAGAATATTGGACTGGCTCTTGATCAGGTGATACCTGGACATGGCACTGTCC CGTTGAGTCCTTATTTCTTCTGGCCAAGGAAGGATGCATGGGAAGAGCTTAAAGCCACTCTAGAGAGTAAGCCATGGATATCCCAGAAGAAGATGATCAT ACTTCTCAATCAGGCCACTGATATCATTAATTTGTGGCAGCAAAGTGGTGGCAATCTTACCACACAATGA
AA sequence Show only first row Show all	>Potri.010G127300.1 pacid=42797545 polypeptide=Potri.010G127300.1.p locus=Potri.010G127300 ID=Potri.010G127300.1.v4.1 annot-version=v4.1 MLSVAFQCGFSNVFTNSSLPCQTPSCKTFKATFSTNPKPNLIHSSTFLDRKRKRVSRNQRYTTFAAPEALTVETPIDTPPSTETEESIPAQGTEKAEVLV KQVEKPRLVLKFIWMEKNIGLALDQVIPGHGTVPLSPYFFWPRKDAWEELKATLESKPWISQKKMIILLNQATDIINLWQQSGGNLTTQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Potri.010G127300 [exp]	0	1
AT3G54210			Ribosomal protein L17 family p...		Potri.006G113500 [exp]	1.00	0.9892
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Potri.002G132200 [exp]	2.44	0.9882	Pt-RPS9.2
AT4G22830			unknown protein		Potri.001G114800 [exp]	4.00	0.9812
AT4G24770		CP31, ATRBP33, ...	ARABIDOPSIS THALIANA RNA BINDI...		Potri.015G086500 [exp]	4.24	0.9786	CTRNP.1
AT5G52960			unknown protein		Potri.012G033700 [exp]	5.91	0.9792
AT3G20680			Domain of unknown function (DU...		Potri.011G132500 [exp]	6.00	0.9793
AT2G35490			Plastid-lipid associated prote...		Potri.001G137900 [exp]	6.32	0.9804
AT3G61870			unknown protein		Potri.014G102400 [exp]	6.48	0.9814
AT4G11175			Nucleic acid-binding, OB-fold-...		Potri.018G038900 [exp]	8.06	0.9757
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Potri.016G072200 [exp]	9.38	0.9778

Compare expression of checked genes

Potri.010G127300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.