Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PDF1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25800 1086 / 0 PP2AA2, PR65, PDF1 protein phosphatase 2A subunit A2 (.1.2) AT1G13320 1053 / 0 PR65, PDF2, PP2AA3 protein phosphatase 2A subunit A3 (.1.2.3) AT1G25490 1019 / 0 REGA, PR65, EER1, ATBBETABETA, RCN1 ROOTS CURL IN NPA, ENHANCED ETHYLENE RESPONSE 1, ARM repeat superfamily protein (.1) AT1G64790 47 / 3e-05 ILA ILITYHIA (.1.2) AT5G64270 44 / 0.0005 splicing factor, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G118500 [exp] 1104 / 0 AT3G25800 1115 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Potri.012G062700 [exp] 1077 / 0 AT3G25800 1116 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Potri.019G024200 [exp] 49 / 1e-05 AT1G64790 3726 / 0.0 ILITYHIA (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035038 [exp] 1079 / 0 AT3G25800 1134 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Lus10021695 [exp] 1073 / 0 AT3G25800 1129 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Lus10034299 [exp] 1061 / 0 AT3G25800 1102 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Lus10041472 [exp] 687 / 0 AT3G25800 867 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Lus10003101 [exp] 51 / 3e-06 AT1G64790 2349 / 0.0 ILITYHIA (.1.2) Lus10004767 [exp] 43 / 0.001 AT1G64790 3557 / 0.0 ILITYHIA (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13646 [poplar] [flax] HEAT_2 HEAT repeats
Representative CDS sequence Show only first row Show all	>Potri.010G127500.1 pacid=42799030 polypeptide=Potri.010G127500.1.p locus=Potri.010G127500 ID=Potri.010G127500.1.v4.1 annot-version=v4.1 ATGTCAACGATGGAAGAACCACTATATCCTATAGCCGTTTTGATAGATGAGTTAAAGAATGATGACATTCAGCTACGGTTAAACTCGATACGTAGACTAT CGACTATTGCACGTGCTCTCGGGGAGGAACGAACCCGGAAGGAGTTAATTCCATTTTTGAGTGAAAATAATGATGATGATGATGAGGTACTCCTTGCATT GGCGGAGGAATTGGGGGTGTTTATTCCTTATGTTGGGGGAGTTGAGTATGCTCATGTTTTGCTCCCACCTCTGGAGACTCTCTGCACTGTTGAGGAAACC TGTGTGAGAGATAAAGCTGTGGAGTCGCTGTGTAGGATTGGATCTCAGATGAGGGAGACTGACCTGGTTGATTGGTTCATTCCTCTTGTCAAGAGACTGG CAGCTGGGGAATGGTTTACCTCTCGAGTTTCTGCATGTGGGCTATTTCATATTGCCTACCCTAGCGCCCCGGAGATGTTGAAGACAGAGTTGCGGTCAAT ATACAGTCAGTTGTGTCAAGATGACATGCCCATGGTTAGGAGGTCTGCGGCCTCTAATTTGGGGAAATTTGCTGCCACTGTTGAATCTGTGCATTTGAAG GCTGACATCCTGTCAATTTTTGAGGATCTTACCCAAGATGATCAAGATTCTGTTCGTTTATTGGCTGTCGAGGGTTGTGCTGCTCTTGGGAAATTATTGG AGCCTCAGGATTGTGTTGCACACATTCTTCCTGTTATTGTTAATTTCTCTCAGGACAAGTCTTGGCGTGTACGCTACATGGTTGCAAATCAACTGTATGA ACTTTGTGAAGCTGTGGGGCCTGAGCCTACCAGGACGGACTTGGTCCCTGCATATGTGCGGTTACTTCGTGATAACGAGGCTGAAGTACGTATAGCAGCT GCTGGAAAAGTAACTAAATTCTGCCGCATTTTAAGTCCAGAACATGCTATTCAGCATATTCTCCCCTGTGTGAAGGAACTGTCATCAGATTCTTCCCAGC ATGTCCGCTCTGCTTTGGCTTCAGTTATAATGGGAATGGCTCCTGTCTTGGGGAAGGATGCCACAATCGAACAGCTTCTTCCAATTTTTCTATCCCTCTT GAAGGATGAATTTCCTGATGTGCGACTGAACATCATCAGCAAGCTTGATCAAGTCAATCAGGTTATTGGGATTGATCTACTATCCCAATCACTATTGCCA GCAATTGTTGAGCTTGCAGAGGATAGGCATTGGAGGGTTCGGCTTGCAATTATAGAGTACATTCCTTTATTGGCAAGTCAATTGGGTGTTGGGTTCTTTG ATGATAAACTTGGCGCTCTTTGCATGCAGTGGTTACAGGATAAGGTTTATTCGATTCGCGATGCTGCTGCAAACAATTTAAAGCGCCTTGCTGAGGAATT TGGTCCTGAGTGGGCAATGGAGCACATAATTCCACAGGTTTTGGAGATGAGCACCAATCCCCATTATTTGTACCGGATGACAATTATACGAGCTGTCTCA TTGCTTGCTCCTGTCATGGGTTCAGAAATTACATGTTCTAAACTGCTGCCAGTGGTCGTCAATGCATCGAAAGACAGGGTGTCAAACATGAAGTTCAATG TGGCGAAGGTGCTGCAATCCCTCATTCCAATAGTTGATCAGTCTGTTGCAGAGAAGACAATCCGTCCCTGTTTGGTTGAGCTCAGTGAGGACCCAGATGT CGATGTCCGTTTTTTCGCAAACCAAGCTCTTCAGACCATTGATAGTGTCATGATGTCTAGCTAG
AA sequence Show only first row Show all	>Potri.010G127500.1 pacid=42799030 polypeptide=Potri.010G127500.1.p locus=Potri.010G127500 ID=Potri.010G127500.1.v4.1 annot-version=v4.1 MSTMEEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLALAEELGVFIPYVGGVEYAHVLLPPLETLCTVEET CVRDKAVESLCRIGSQMRETDLVDWFIPLVKRLAAGEWFTSRVSACGLFHIAYPSAPEMLKTELRSIYSQLCQDDMPMVRRSAASNLGKFAATVESVHLK ADILSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYVRLLRDNEAEVRIAA AGKVTKFCRILSPEHAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMEHIIPQVLEMSTNPHYLYRMTIIRAVS LLAPVMGSEITCSKLLPVVVNASKDRVSNMKFNVAKVLQSLIPIVDQSVAEKTIRPCLVELSEDPDVDVRFFANQALQTIDSVMMSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Potri.010G127500 [exp]	0	1	PDF1.3
AT1G18640		PSP	3-phosphoserine phosphatase (....		Potri.012G066200 [exp]	1.41	0.8766	PSP.1
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Potri.011G052800 [exp]	8.12	0.8505	Pt-NSF.2
AT3G17430			Nucleotide-sugar transporter f...		Potri.010G001700 [exp]	12.96	0.8262
AT1G50710			unknown protein		Potri.011G090800 [exp]	14.14	0.7881
AT5G49830		EXO84B	exocyst complex component 84B ...		Potri.010G249900 [exp]	14.45	0.7947
AT4G38510			ATPase, V1 complex, subunit B ...		Potri.009G137800 [exp]	14.96	0.8108
AT1G72480			Lung seven transmembrane recep...		Potri.003G068500 [exp]	15.29	0.8160
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.009G028200 [exp]	21.84	0.8284	Pt-ADF1.1
AT2G44100		AT-GDI1, ATGDI1	guanosine nucleotide diphospha...		Potri.017G001200 [exp]	22.84	0.7994	Pt-GDI.1
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Potri.010G001900 [exp]	26.38	0.8128	NPSN12.1

Compare expression of checked genes

Potri.010G127500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.