Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68640 84 / 4e-19 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT3G12250 58 / 3e-10 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06960 46 / 5e-06 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT5G06950 46 / 6e-06 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT5G06839 45 / 1e-05 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT1G08320 43 / 4e-05 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT5G65210 43 / 4e-05 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6) AT5G10030 42 / 9e-05 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G118300 [exp] 215 / 2e-68 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.001G029800 [exp] 80 / 1e-17 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.003G194600 [exp] 78 / 6e-17 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.006G039000 [exp] 62 / 1e-11 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.016G036500 [exp] 62 / 2e-11 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.002G090700 [exp] 47 / 3e-06 AT1G77920 444 / 1e-156 bZIP transcription factor family protein (.1) Potri.005G082000 [exp] 45 / 2e-05 AT5G65210 506 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.006G058800 [exp] 44 / 2e-05 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.005G170500 [exp] 44 / 3e-05 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041475 [exp] 81 / 6e-18 AT1G68640 444 / 4e-153 PERIANTHIA, bZIP transcription factor family protein (.1) Lus10034296 [exp] 69 / 7e-14 AT1G68640 427 / 1e-146 PERIANTHIA, bZIP transcription factor family protein (.1) Lus10024140 [exp] 53 / 3e-08 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10026166 [exp] 49 / 5e-07 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10008658 [exp] 47 / 3e-06 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10020610 [exp] 46 / 9e-06 AT1G08320 633 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10037550 [exp] 44 / 2e-05 AT5G65210 444 / 3e-155 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10004876 [exp] 44 / 2e-05 AT1G08320 635 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10011445 [exp] 44 / 3e-05 AT5G65210 449 / 2e-158 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10023822 [exp] 43 / 7e-05 AT5G06839 491 / 2e-171 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G128001.5 pacid=42797534 polypeptide=Potri.010G128001.5.p locus=Potri.010G128001 ID=Potri.010G128001.5.v4.1 annot-version=v4.1 ATGTTCTGTCTAAAATCAGGCAATGTCACCGTTGTGTCCCATAACTTACCTTATGCAACTGCCTTGAACACGAGCATTGGGTCAGCAGAGATAGCAACAA CTGGAGCAGGGTGTCTGGACACAGGGCAATACGTGTACCAGAAAGGGACTGGGTTTGATTCCTCGTTGGGAAACGGGCAGAGTTTTGAGAATTGGGGAGA CTCAGGGATGGCAGATAATAGCCTACAGACGGACACCTCAACAGATGTTAATACTGATGATAAAAACCAGCTTCGTGGAGTTCCGCATGGTGCAGTCATG GTTGTGAATTCTATGGATCAATCCAAGGGAAGAACTAGTGACCAAAAGACGCAGACCCTTCGAAGGCTGGCTCAGAATCGTGAAGCTGCAAGGAGGGGTC GACTTAGGAAGAAAGTAATGTCTTTGCTAGTTATGTTATATTGTTTCCTCACGCTGATGATTGGGATTCTTAAAATCTTTTTTTTTTTTTTTTTTTGGAA TCTTGTTTTTCCAAGTCTTACATTCTCTTTATCCTTCAGTTTTGCCCTTGAATTCCCCTACTGTAGGAAATAA
AA sequence Show only first row Show all	>Potri.010G128001.5 pacid=42797534 polypeptide=Potri.010G128001.5.p locus=Potri.010G128001 ID=Potri.010G128001.5.v4.1 annot-version=v4.1 MFCLKSGNVTVVSHNLPYATALNTSIGSAEIATTGAGCLDTGQYVYQKGTGFDSSLGNGQSFENWGDSGMADNSLQTDTSTDVNTDDKNQLRGVPHGAVM VVNSMDQSKGRTSDQKTQTLRRLAQNREAARRGRLRKKVMSLLVMLYCFLTLMIGILKIFFFFFFWNLVFPSLTFSLSFSFALEFPYCRK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Potri.010G128001 [exp]	0	1
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.003G013601 [exp]	1.00	0.9111
AT1G77700			Pathogenesis-related thaumatin...		Potri.003G020100 [exp]	2.44	0.7910
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Potri.006G070800 [exp]	10.81	0.7518
AT4G27360			Dynein light chain type 1 fami...		Potri.004G034000 [exp]	13.85	0.7777
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Potri.003G022701 [exp]	15.87	0.7218
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Potri.010G053500 [exp]	20.90	0.7337
AT3G61700			Plant protein 1589 of unknown ...		Potri.012G001900 [exp]	27.34	0.7487
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Potri.004G128701 [exp]	38.70	0.7517
					Potri.004G179822 [exp]	38.78	0.7082
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G020500 [exp]	39.30	0.7497

Compare expression of checked genes

Potri.010G128001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.