Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25500 582 / 0 Plasma-membrane choline transporter family protein (.1.2.3) AT5G13760 113 / 2e-26 Plasma-membrane choline transporter family protein (.1) AT3G04440 71 / 9e-13 Plasma-membrane choline transporter family protein (.1) AT3G03700 71 / 1e-12 Plasma-membrane choline transporter family protein (.1) AT5G17830 54 / 1e-07 Plasma-membrane choline transporter family protein (.1) AT4G38640 46 / 6e-05 Plasma-membrane choline transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G118200 [exp] 811 / 0 AT1G25500 588 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Potri.001G261900 [exp] 114 / 7e-27 AT5G13760 640 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.009G056700 [exp] 113 / 1e-26 AT5G13760 639 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.019G040500 [exp] 77 / 1e-14 AT3G04440 422 / 6e-145 Plasma-membrane choline transporter family protein (.1) Potri.013G066100 [exp] 71 / 5e-13 AT3G03700 436 / 7e-151 Plasma-membrane choline transporter family protein (.1) Potri.011G121100 [exp] 51 / 2e-06 AT3G15380 1135 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.009G132900 [exp] 46 / 5e-05 AT4G38640 631 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.004G173600 [exp] 46 / 7e-05 AT4G38640 620 / 0.0 Plasma-membrane choline transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034295 [exp] 636 / 0 AT1G25500 625 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Lus10041476 [exp] 634 / 0 AT1G25500 624 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Lus10039585 [exp] 110 / 1e-25 AT5G13760 719 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10005331 [exp] 110 / 1e-25 AT5G13760 714 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10035837 [exp] 49 / 1e-05 AT3G15380 561 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10036620 [exp] 48 / 2e-05 AT3G15380 1154 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10025051 [exp] 43 / 0.0007 AT4G38640 674 / 0.0 Plasma-membrane choline transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04515 [poplar] [flax] Choline_transpo Plasma-membrane choline transporter
Representative CDS sequence Show only first row Show all	>Potri.010G128100.1 pacid=42797122 polypeptide=Potri.010G128100.1.p locus=Potri.010G128100 ID=Potri.010G128100.1.v4.1 annot-version=v4.1 ATGAACGACTCTCATAGTTCCTCCTTCGATTCCGCCTCCAAGGCTGCCATCGATCAGAATGTCGGGAGGAGTCGAAGAAATGGGAATGGTGATCTAACAC TGGCGACCGATATACCACGCCACTGGCATGATATTTTCTGGTTAGGAGTCTTTTTGTTTCACTTGATGGGATTAGCACTTGGTCTTGCAGTTCTTGGGCT CAATAGGTTTAAGAAATCAGACAGGTTTAATTTCGATAGATACACTACTAACACAACTGGCACCGTGGGAAATAGTCATGGACTTACGGAAGATTATTGG CCAATGTTTGGTCTTGGTGGTGGAGTTGGGACTGTACTTGGATGGGCTTGGTTGTTGTTGCTTGGTTTTCAGGCGAATCATATGATGAAGATCTCGGTGC ATATTTTGACTACTTATCTTGCTGTGGTTAGTGTTTTGTGTTTCTGGAGCGAGCATTTTTTATGGGGTGTCACGTTTGCAATTGGTGCTGCTTTGCAGTT TTTATATGTCATATCTGTTATAGACAGACTCCCATTTACCATGCTGGTGCTTCAAAAAGCCGTGAAAATGGTATGGAGCCTTCCTGAAGTTATGAGAGTT TCGTATGCATTTATGCTAGTCATGCTTTTGTGGATGGGATTGTGGTCTTTTGGGGCAGCTGGTGTTGTGGCTTCAAACATCAATCTCAATGGACGCTGGT GGCTTCTTGTGGTTTTGTCACTAAGCTTATTTTGGACGGGTGCAGTCCTCTGTAATACTGTACATGTTATAGTGTCTGGGATGGTGTTCCTTGTTCTTAT TCATGGTGGCCGAGAAGCAGCATCAATGCCTCCCAACTCTTTGATGAAGTCTCTGAGATATTCTGTGACGAAATCTTTTGGCAGCATTTGCTATGGATCA CTCTTTACTGCTGCAATTAGGACACTGCGGTGGGAGATCAGGGGATTGCGGTCAAAGATAGGCAAGAATGAATGCTTGCTTTGCTGTGTTGATTTTCTAT TTCATCTCGTGGAGACTCTTGTCCGCTTTTTCAACAAGTATGCATACGTCCAGATAGCTGTTCATGGGAAAAGTTTTAACCGTTCAGCTAGGGATGCCTG GGAATTGTTTCAATCAACTGGAGTTGAAGCACTCATCGCCTATGATTGTTCAGGTGCAGTTCTACTGATGGTAACGCTTTTGGGTGGGCTCATCACCGGG ACTTGCTCAGGTGTTTGGACTCATATTAAATGGGATGATGATAGAGTGACCATGGTGGGATCCACTGCAATGTTGATGGGAATGGTCTTGGTTGGACTAG CTATGGTGGTTGTTGAGAGTGCTGTTACATCCATATATATCTGTTACGCAGAAGATCCCCTATTAATACATAGATGGGATGCTGAATTCTTCAACCAATT GTCTGAGGCACTACACCAGCGTCTTCAACATAGAAGTTCCCGGGCAAGGGAAGTATTGACCCAGAATCGATTGAATGTTGGCATACAGGAAAATGTCCCT CTCTGA
AA sequence Show only first row Show all	>Potri.010G128100.1 pacid=42797122 polypeptide=Potri.010G128100.1.p locus=Potri.010G128100 ID=Potri.010G128100.1.v4.1 annot-version=v4.1 MNDSHSSSFDSASKAAIDQNVGRSRRNGNGDLTLATDIPRHWHDIFWLGVFLFHLMGLALGLAVLGLNRFKKSDRFNFDRYTTNTTGTVGNSHGLTEDYW PMFGLGGGVGTVLGWAWLLLLGFQANHMMKISVHILTTYLAVVSVLCFWSEHFLWGVTFAIGAALQFLYVISVIDRLPFTMLVLQKAVKMVWSLPEVMRV SYAFMLVMLLWMGLWSFGAAGVVASNINLNGRWWLLVVLSLSLFWTGAVLCNTVHVIVSGMVFLVLIHGGREAASMPPNSLMKSLRYSVTKSFGSICYGS LFTAAIRTLRWEIRGLRSKIGKNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVHGKSFNRSARDAWELFQSTGVEALIAYDCSGAVLLMVTLLGGLITG TCSGVWTHIKWDDDRVTMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQLSEALHQRLQHRSSRAREVLTQNRLNVGIQENVP L

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25500			Plasma-membrane choline transp...		Potri.010G128100 [exp]	0	1
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.005G207700 [exp]	5.74	0.7629
AT4G27190			NB-ARC domain-containing disea...		Potri.001G426200 [exp]	7.00	0.7977
AT1G31840			Tetratricopeptide repeat (TPR)...		Potri.015G036400 [exp]	8.00	0.7802
AT3G10540			3-phosphoinositide-dependent p...		Potri.010G232800 [exp]	9.94	0.7344
AT3G53690			RING/U-box superfamily protein...		Potri.018G064400 [exp]	12.44	0.7589
AT5G63930			Leucine-rich repeat protein ki...		Potri.019G025500 [exp]	18.65	0.7600
AT4G16260			Glycosyl hydrolase superfamily...		Potri.010G143166 [exp]	22.18	0.6685
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Potri.004G213300 [exp]	23.15	0.7359
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.007G056400 [exp]	24.28	0.7346	Pt-ATHK1.2
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.001G400300 [exp]	25.57	0.7555

Compare expression of checked genes

Potri.010G128100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.