Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25510 622 / 0 Eukaryotic aspartyl protease family protein (.1) AT3G18490 534 / 0 Eukaryotic aspartyl protease family protein (.1) AT3G61820 374 / 2e-125 Eukaryotic aspartyl protease family protein (.1) AT1G01300 372 / 7e-125 Eukaryotic aspartyl protease family protein (.1) AT3G20015 359 / 8e-120 Eukaryotic aspartyl protease family protein (.1) AT3G59080 233 / 3e-70 Eukaryotic aspartyl protease family protein (.1.2) AT5G10770 228 / 7e-69 Eukaryotic aspartyl protease family protein (.1) AT2G42980 227 / 5e-68 Eukaryotic aspartyl protease family protein (.1) AT2G03200 223 / 2e-67 Eukaryotic aspartyl protease family protein (.1) AT5G10760 214 / 6e-64 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G118100 [exp] 555 / 0 AT1G25510 373 / 8e-126 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 548 / 0 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 375 / 2e-125 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 373 / 4e-125 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 369 / 2e-123 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 362 / 1e-120 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G204600 [exp] 257 / 4e-79 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.006G232600 [exp] 244 / 4e-75 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.018G014700 [exp] 238 / 7e-73 AT5G10770 407 / 1e-138 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042978 [exp] 438 / 2e-150 AT3G18490 504 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 356 / 2e-118 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10010157 [exp] 335 / 3e-110 AT3G20015 545 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10017362 [exp] 331 / 1e-108 AT3G20015 549 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10032482 [exp] 281 / 1e-90 AT3G18490 339 / 2e-113 Eukaryotic aspartyl protease family protein (.1) Lus10007335 [exp] 266 / 9e-83 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035961 [exp] 248 / 4e-77 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10030246 [exp] 245 / 2e-76 AT1G01300 472 / 3e-165 Eukaryotic aspartyl protease family protein (.1) Lus10025702 [exp] 244 / 5e-73 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041621 [exp] 218 / 4e-65 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Potri.010G128200.1 pacid=42798245 polypeptide=Potri.010G128200.1.p locus=Potri.010G128200 ID=Potri.010G128200.1.v4.1 annot-version=v4.1 ATGGGGCTTCTCTTTTACGTTTTCTTCTCTTTGTTTTTCGCTTCACCACCTGTTTCCTGCTCTCGAATTCTAACACCACATCCTTCCGAAACGACAGTCC TTGATGTCGCCGCCTCCATTCAAAGAACGAAAAACATTTTCTCTTCTGGCCCTAAAATGTCACCGTTTAACCAGCAAGAGAAAGAAACTACCTCGTCAGA ACTTACAGTAGAGCTGCTTTCTAGAACTTCCATTCAAAAAACCACGCACACTGGCTACAAGTCGCTAACCTTATCTCGCCTCCAGCGTGACTCTGCCCGA GTCAAATCTCTCGTGACTCGTTTAGATCTAGCCATCAATTCCATTTCCTCGTCAGATCTTAAACCACTTGAGACTGATTCAGAATTCAAACCTGAGGATC TACAGAGCCCGATTATATCTGGCACGAGTCAAGGAAGTGGTGAGTACTTCTCCCGAGTTGGAATCGGAAAACCACCAAGTCAAGCTTATTTAATACTCGA CACTGGTAGTGACGTTAACTGGGTACAATGCGCACCCTGCGCTGATTGTTATCAGCAAGCGGACCCCATCTTTGAGCCGGCTTCATCGGCTTCCTTCTCA ACTCTATCTTGCAACACCAGGCAATGCAGGTCCCTCGACGTATCAGAATGCCGGAATGACACGTGTCTCTACGAGGTTTCGTATGGGGACGGGTCTTACA CCGTTGGTGATTTTGTTACTGAGACTATTACTCTTGGCTCAGCCCCAGTTGATAACGTGGCTATCGGCTGTGGACATAATAATGAAGGATTGTTCGTAGG AGCCGCTGGCTTGCTAGGGCTCGGCGGCGGCTCGTTGTCCTTCCCTTCTCAGATCAATGCGACGTCATTTTCTTATTGCCTCGTGGATCGTGATTCTGAG TCTGCTTCAACTCTCGAGTTCAACTCAACTCTCCCTCCTAACGCTGTCTCTGCTCCGTTGCTCCGGAACCACCATCTTGATACCTTTTATTACGTTGGAT TAACGGGACTGAGTGTAGGTGGGGAGTTGGTTTCGATTCCTGAATCGGCGTTTCAAATTGATGAGTCGGGAAATGGAGGGGTAATTGTTGACTCGGGAAC GGCCATTACTCGGTTGCAAACGGACGTTTACAACTCTCTGCGTGATGCCTTTGTAAAGAGAACGAGGGACTTGCCGTCGACTAATGGGATAGCGTTGTTT GACACGTGTTATGATTTGTCTTCTAAAGGGAACGTGGAGGTGCCGACGGTGTCTTTTCATTTTCCTGATGGAAAGGAGTTACCGTTACCGGCGAAAAACT ACTTGGTTCCGCTAGACTCGGAAGGAACGTTTTGTTTTGCTTTTGCACCAACGGCTTCGTCTTTGTCAATTATTGGGAACGTGCAGCAGCAGGGGACACG TGTCGTTTATGATCTGGTTAACCATCTAGTTGGGTTCGTGCCTAATAAATGCTAG
AA sequence Show only first row Show all	>Potri.010G128200.1 pacid=42798245 polypeptide=Potri.010G128200.1.p locus=Potri.010G128200 ID=Potri.010G128200.1.v4.1 annot-version=v4.1 MGLLFYVFFSLFFASPPVSCSRILTPHPSETTVLDVAASIQRTKNIFSSGPKMSPFNQQEKETTSSELTVELLSRTSIQKTTHTGYKSLTLSRLQRDSAR VKSLVTRLDLAINSISSSDLKPLETDSEFKPEDLQSPIISGTSQGSGEYFSRVGIGKPPSQAYLILDTGSDVNWVQCAPCADCYQQADPIFEPASSASFS TLSCNTRQCRSLDVSECRNDTCLYEVSYGDGSYTVGDFVTETITLGSAPVDNVAIGCGHNNEGLFVGAAGLLGLGGGSLSFPSQINATSFSYCLVDRDSE SASTLEFNSTLPPNAVSAPLLRNHHLDTFYYVGLTGLSVGGELVSIPESAFQIDESGNGGVIVDSGTAITRLQTDVYNSLRDAFVKRTRDLPSTNGIALF DTCYDLSSKGNVEVPTVSFHFPDGKELPLPAKNYLVPLDSEGTFCFAFAPTASSLSIIGNVQQQGTRVVYDLVNHLVGFVPNKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25510			Eukaryotic aspartyl protease f...		Potri.010G128200 [exp]	0	1
AT4G20940			Leucine-rich receptor-like pro...		Potri.011G163700 [exp]	1.00	0.8432
AT3G28040			Leucine-rich receptor-like pro...		Potri.002G233600 [exp]	2.82	0.8291
AT5G11020			Protein kinase superfamily pro...		Potri.006G260100 [exp]	5.47	0.7679
AT5G51750		ATSBT1.3	subtilase 1.3 (.1)		Potri.015G133800 [exp]	10.09	0.8017
AT4G30410			sequence-specific DNA binding ...		Potri.006G177000 [exp]	10.77	0.8116
AT1G77690		LAX3	like AUX1 3 (.1)		Potri.005G174000 [exp]	11.22	0.7814	PtrAUX7
AT3G49220			Plant invertase/pectin methyle...		Potri.015G013700 [exp]	12.00	0.7558	PME2.12
AT2G26110			Protein of unknown function (D...		Potri.018G053000 [exp]	12.04	0.8076
AT1G69910			Protein kinase superfamily pro...		Potri.010G035300 [exp]	19.23	0.7331
AT3G12710			DNA glycosylase superfamily pr...		Potri.010G175300 [exp]	20.49	0.7338

Compare expression of checked genes

Potri.010G128200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.