Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25520 334 / 1e-117 Uncharacterized protein family (UPF0016) (.1) AT1G68650 330 / 6e-116 Uncharacterized protein family (UPF0016) (.1) AT5G36290 156 / 1e-46 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) AT4G13590 129 / 2e-35 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) AT1G64150 95 / 1e-22 Uncharacterized protein family (UPF0016) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G117900 [exp] 391 / 5e-140 AT1G25520 344 / 2e-121 Uncharacterized protein family (UPF0016) (.1) Potri.019G116100 [exp] 391 / 6e-140 AT1G25520 344 / 2e-121 Uncharacterized protein family (UPF0016) (.1) Potri.013G086700 [exp] 160 / 2e-48 AT5G36290 322 / 8e-111 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.019G053400 [exp] 159 / 5e-48 AT5G36290 328 / 4e-113 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.003G174600 [exp] 124 / 7e-34 AT4G13590 369 / 2e-127 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.001G053600 [exp] 124 / 1e-33 AT4G13590 417 / 5e-146 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.003G134300 [exp] 103 / 6e-26 AT1G64150 344 / 6e-117 Uncharacterized protein family (UPF0016) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034293 [exp] 363 / 5e-129 AT1G25520 349 / 2e-123 Uncharacterized protein family (UPF0016) (.1) Lus10035040 [exp] 355 / 8e-123 AT1G25520 339 / 4e-116 Uncharacterized protein family (UPF0016) (.1) Lus10041478 [exp] 343 / 4e-121 AT1G25520 327 / 1e-114 Uncharacterized protein family (UPF0016) (.1) Lus10026995 [exp] 164 / 8e-50 AT5G36290 401 / 5e-142 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10020195 [exp] 141 / 5e-42 AT5G36290 321 / 5e-112 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10023685 [exp] 127 / 5e-35 AT4G13590 443 / 1e-156 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10011763 [exp] 125 / 3e-34 AT4G13590 429 / 6e-151 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10021697 [exp] 100 / 2e-25 AT1G25520 94 / 5e-23 Uncharacterized protein family (UPF0016) (.1) Lus10032330 [exp] 91 / 4e-21 AT1G64150 333 / 8e-113 Uncharacterized protein family (UPF0016) (.1) Lus10024713 [exp] 88 / 4e-20 AT1G64150 322 / 5e-108 Uncharacterized protein family (UPF0016) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0292 [poplar] [flax] LysE PF01169 [poplar] [flax] UPF0016 Uncharacterized protein family UPF0016
Representative CDS sequence Show only first row Show all	>Potri.010G128400.2 pacid=42798457 polypeptide=Potri.010G128400.2.p locus=Potri.010G128400 ID=Potri.010G128400.2.v4.1 annot-version=v4.1 ATGACCTCGGTTGCTCAGGGTTTCACTAAGTCCCTTGCAATGACCGTGCTATCGGAGATCGGCGACAAGACTTTTTTTGCTGCTGCGATCTTGGCCATGC GTCACCCAAGAAGACTTGTTTTGTCAGGTTGCTTGGCAGCTTTGATTGTGATGACTATCCTTTCTGCTATCGTTGGCTGGGCTGCTCCAAATCTGATCTC TCGTACTTGGACTCATCACATAACAACAATACTGTTTTTTGGATTTGGGTTTTGGTCATTGTGGGATGGATTTAATGACAAAGGGGAGGCTGAAGAATTG GCAGAAGTTGAAGCTAAATTGGATGCTGATTGGAAAGCTAACACAGGAACCACCAAAGGTGGTAGCAAGGACGATGATGAGTTGAAAAAGCGGAGGCGGC CATTTCTTTCACAGTTGTTCTCGCCAATACTCTTGAAAGCATTTTCCATTACATTCTTTGGTGAATGGGGTGACAAGAGCCAGATAGCCACCATTGGCTT GGCTGCTGATGAGAACCCATTAGGTGTAGTTCTTGGTGGAATTGTAGGGCAAGCATTGTGTACTACTGCCGCTGTTTTTGGTGGAAAGAGCTTGGCATCT CAAATATCTGAGAAAATAGTTGCATTGTCAGGTGGAGTTCTTTTTATTATTTTTGGAATCCAATCCTTCCTATCAACGGTTGAGTAG
AA sequence Show only first row Show all	>Potri.010G128400.2 pacid=42798457 polypeptide=Potri.010G128400.2.p locus=Potri.010G128400 ID=Potri.010G128400.2.v4.1 annot-version=v4.1 MTSVAQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLAALIVMTILSAIVGWAAPNLISRTWTHHITTILFFGFGFWSLWDGFNDKGEAEEL AEVEAKLDADWKANTGTTKGGSKDDDELKKRRRPFLSQLFSPILLKAFSITFFGEWGDKSQIATIGLAADENPLGVVLGGIVGQALCTTAAVFGGKSLAS QISEKIVALSGGVLFIIFGIQSFLSTVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25520			Uncharacterized protein family...		Potri.010G128400 [exp]	0	1
AT5G11900			Translation initiation factor ...		Potri.006G228100 [exp]	5.91	0.6955
AT4G27040		VPS22	EAP30/Vps36 family protein (.1...		Potri.001G424600 [exp]	6.48	0.6811
AT5G63220			unknown protein		Potri.010G217400 [exp]	8.36	0.6532
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Potri.002G252600 [exp]	9.79	0.6985	Pt-RPT2.2
AT4G31300		PBA1	N-terminal nucleophile aminohy...		Potri.018G145900 [exp]	10.48	0.7247	Pt-PBA1.1
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Potri.010G098300 [exp]	10.48	0.6685	A1.4
AT2G16460			Protein of unknown function (D...		Potri.009G123700 [exp]	11.31	0.6967
AT3G27430		PBB1	N-terminal nucleophile aminohy...		Potri.004G066000 [exp]	12.24	0.7028	Pt-PBB1.2
AT2G38710			AMMECR1 family (.1.2)		Potri.010G240000 [exp]	18.33	0.6497
AT2G30050			transducin family protein / WD...		Potri.010G100400 [exp]	18.43	0.6407

Compare expression of checked genes

Potri.010G128400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.