Plant FIBer expression Database

PFT1.1 (Potri.010G128600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol PFT1.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G25540 793 / 0 MED25, PFT1 PHYTOCHROME AND FLOWERING TIME 1, mediator 25, phytochrome and flowering time regulatory protein (PFT1) (.1), phytochrome and flowering time regulatory protein (PFT1) (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G117700
[exp]
1148 / 0 AT1G25540 780 / 0.0 PHYTOCHROME AND FLOWERING TIME 1, mediator 25, phytochrome and flowering time regulatory protein (PFT1) (.1), phytochrome and flowering time regulatory protein (PFT1) (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041483
[exp]
943 / 0 AT1G25540 787 / 0.0 PHYTOCHROME AND FLOWERING TIME 1, mediator 25, phytochrome and flowering time regulatory protein (PFT1) (.1), phytochrome and flowering time regulatory protein (PFT1) (.2)
Lus10034282
[exp]
861 / 0 AT1G25540 169 / 2e-43 PHYTOCHROME AND FLOWERING TIME 1, mediator 25, phytochrome and flowering time regulatory protein (PFT1) (.1), phytochrome and flowering time regulatory protein (PFT1) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0128 vWA-like PF11265 Med25_VWA Mediator complex subunit 25 von Willebrand factor type A
Representative CDS sequence
>Potri.010G128600.1 pacid=42797945 polypeptide=Potri.010G128600.1.p locus=Potri.010G128600 ID=Potri.010G128600.1.v4.1 annot-version=v4.1
ATGGCGGAGAAACAGTTGATCGTGGCCGTTGAAGGCACTGCTGCCATGGGCCCTTTCTGGTCGATCATCGTTTCTGATTACCTTGAAAAGATCATCAGGT
GTTATTGTGGCAACGAATTGTTAGGGCAGAAGGTCCCTACTTCCATTGTTGAGCTCTCAATTGTCACGTTTAATTCTCATGGATCATATTCTGCTTGCCT
AGTACAACGGAGTGGCTGGACAAGAGATGTTGATATCTTCTTACAGTGGCTATCAGCAATTCCCTTTGCTGGTGGTGGTTTCAATGATGCTGCAATTGCA
GAAGGGCTTTCTGAAGCTCTAATGATGTTCCCTATTGATCCAAATGGAAGCCAAACTCAATCAAATATAGACGAGCAAAGGAACTGTATTCTTATTGCTG
CAAGTAACCCACACCCATTGCCCACACCAGTATATCGTCCACAAATACAAAATTTGGAGCAGATTGAAAATATTGATGCACAGAATGAAAGTCGTCTATC
TGATGCAGAGACAGTTGCTAAATCATTTCCTCAGTGCTCGGTTTCTCTTTCAATCATTTGTCCAAAACAGCTTCCAAAACTTAGGTCAATCTACAATGCT
GGGAAGCGCAACAGCCGAGCAGCAGATCCACCTGTTGACAGTGTAAAAAATCCTCATTTTCTTGTGTTAATCTCAGAGAACTTTATGGAGGCTCGTGCTG
CATTGAGTCTTCCTGGAGTTACAAGTTTGACTTCTAATCAAACTCCTGTAAAAGTGGATATTGCTTCAGTTACTTCTGTAACTGGGCCAGCTCCAACTTC
TATTCCGTCAGTGAATGGATCTATCACAAATCGACCAACAATTTCAGTTGGAAATGTTCCCACTGCAACTGTGAAAGTTGAGCCAAGTACTATAACTTCC
ATGGCAAATGGACCTACTTTCCCCCATAATCCTTCTGTTCCACGCCCTGCATCTCAAGGAGTTCCAATCTTGCAGACTTCTTCACCATCTACTACTACTC
AAGATATGGCAACAAGTGGTGATGATGTGCAGGACTTGAAACCAAATGTCAGTGTGATGACTCAGTCTGCACGTCCTGGGCCTCCTGCTGCAGCAAATGT
GAGCATTCTGAACAATATCTCTCAAGCACGGCAAGTGATGAACTCTGCAGGCTTAAGTGGAGGAACTTCTTTAGGTCTCCCATCAATAAATCAAACTTCT
GTGGCCATGCATATGTCAAATATGATTTCGAGTGGAATGGCATCTTCTGTGCCTGCTGCCCCAACTGTATTTTCATCTGGGCAACCAGGTGTCTCTTCGA
TAACAGGGTCAGGGACTCTTACTGGGACAACGCAAATTGGGCCAAACTCTGGTCTTGGATCATTCACTTCTGCTACTTCTAATGTGTCTGGAAATTCAAA
CCTTGGGAGGATTTCACAACCAATGGGTAATCTTCAAGCAGGTGTTAGCATTGGCCAATCAGCACCAGGCATGAGCCAAGGAAATATTTCAGGAGCACAA
ATGGTACAAAGTGGGATGGGTGCAAACCCAAACACAATGAGCGGTCTGGGTCCATCAGGTGTCTCTTCTGGTTTGAACACGATGATTCCTACCCCTGGAA
TGTCTCAACAAGTACAATCCGGGATGCAGCCTCTTGGTGCAAACAATAACTCAGCAGATAATTTGTCAATGTCACAACAAACAGCAGGGGGCTTGCAACC
ACCACAATCAAAATATGTCAAAGTCTGGGAGGGAAACTTGTCTGGGCAACGGCAAGGGCAGCCTGTCTTTATCACCAGATTAGAAGGTTATAGGAGTGCT
TCGGCCTCGGAGACGCTTGCAGCAAACTGGCCACCGACAATGCAAATAGTTCGGCTTATATCTCAGGACCACATGAATAACAAGCAATATGTCGGAAAGG
CTGATTTTCTAGTTTTTCGGGCCATGAATCAGCATGGATTTCTTGGACAACTCCAAGAGAAGAAGCTTTGTGCAGTAATCCAGTTACCATCTCAGACATT
GCTTCTCTCTGTTTCTGACAAAGCCTGCCGCTTGATAGGGATGCTTTTTCCTGGGGATATGGTTGTGTTTAAGCCACAAATATCCAGTCAGCAGCAGCAG
ATGCAAATGCAACGGCAGCAGCAGCAGCAGCAGCAGATGCAACAACAACAACAACAGCAACAACATCCACAACTGCAGCAGCAGCAACATCAGCAGCAGC
TTCCACAATTGCAACAGCAGCAGCTGTCGCTGCTGCAACAACAGCAGCTGTCGCTGCTGCAACAGCAGCAGCAGCTTCCGCAATTGCAGCAACAGCAAAT
GGCTGGAACAGGAATGGGTCAAACTTATGTTCAAGGTCCAGGTCGTCCACAATTAGTTTCTCAAGGACAAGTTTCTTCACAAGGGCCAGCAAACATGCCT
GGAGGAGGCTTTATGAGTTAA
AA sequence
>Potri.010G128600.1 pacid=42797945 polypeptide=Potri.010G128600.1.p locus=Potri.010G128600 ID=Potri.010G128600.1.v4.1 annot-version=v4.1
MAEKQLIVAVEGTAAMGPFWSIIVSDYLEKIIRCYCGNELLGQKVPTSIVELSIVTFNSHGSYSACLVQRSGWTRDVDIFLQWLSAIPFAGGGFNDAAIA
EGLSEALMMFPIDPNGSQTQSNIDEQRNCILIAASNPHPLPTPVYRPQIQNLEQIENIDAQNESRLSDAETVAKSFPQCSVSLSIICPKQLPKLRSIYNA
GKRNSRAADPPVDSVKNPHFLVLISENFMEARAALSLPGVTSLTSNQTPVKVDIASVTSVTGPAPTSIPSVNGSITNRPTISVGNVPTATVKVEPSTITS
MANGPTFPHNPSVPRPASQGVPILQTSSPSTTTQDMATSGDDVQDLKPNVSVMTQSARPGPPAAANVSILNNISQARQVMNSAGLSGGTSLGLPSINQTS
VAMHMSNMISSGMASSVPAAPTVFSSGQPGVSSITGSGTLTGTTQIGPNSGLGSFTSATSNVSGNSNLGRISQPMGNLQAGVSIGQSAPGMSQGNISGAQ
MVQSGMGANPNTMSGLGPSGVSSGLNTMIPTPGMSQQVQSGMQPLGANNNSADNLSMSQQTAGGLQPPQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSA
SASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISSQQQQ
MQMQRQQQQQQQMQQQQQQQQHPQLQQQQHQQQLPQLQQQQLSLLQQQQLSLLQQQQQLPQLQQQQMAGTGMGQTYVQGPGRPQLVSQGQVSSQGPANMP
GGGFMS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G25540 MED25, PFT1 PHYTOCHROME AND FLOWERING TIME... Potri.010G128600
[exp]
0 1 PFT1.1
AT4G11670 Protein of unknown function (D... Potri.001G108400
[exp]
4.24 0.7798
AT1G54490 ATXRN4, XRN4, E... ETHYLENE INSENSITIVE 5, ACC IN... Potri.013G035600
[exp]
5.47 0.7718 XRN4.2
AT3G52660 RNA-binding (RRM/RBD/RNP motif... Potri.016G079200
[exp]
5.56 0.7860
AT5G35980 YAK1 yeast YAK1-related gene 1 (.1.... Potri.013G075300
[exp]
7.61 0.7030
AT4G37190 unknown protein Potri.001G361900
[exp]
8.48 0.7490
AT1G30330 ARF ARF6 auxin response factor 6 (.1.2) Potri.011G091900
[exp]
9.89 0.7510 ARF6.4
AT1G11420 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724... Potri.014G117800
[exp]
10.67 0.7530
AT5G15270 RNA-binding KH domain-containi... Potri.017G085500
[exp]
11.48 0.6710
AT5G09860 AtTHO1, AtHPR1 nuclear matrix protein-related... Potri.003G194000
[exp]
13.03 0.7579
AT5G53620 unknown protein Potri.015G006700
[exp]
13.85 0.7613

Potri.010G128600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.