Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13310 299 / 3e-99 Endosomal targeting BRO1-like domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034281 [exp] 452 / 5e-159 AT1G13310 259 / 8e-84 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10041484 [exp] 234 / 9e-76 AT1G13310 135 / 1e-37 Endosomal targeting BRO1-like domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03097 [poplar] [flax] BRO1 BRO1-like domain
Representative CDS sequence Show only first row Show all	>Potri.010G128700.1 pacid=42798847 polypeptide=Potri.010G128700.1.p locus=Potri.010G128700 ID=Potri.010G128700.1.v4.1 annot-version=v4.1 ATGATGCTTCAATATCGAGACCTGGCCAAGCTTAAAACCAAAAAGATTGTTTTTGAAGATGTAATCGCTGCACGTGATTCTGCTACACTAGAGCATCTGA AAGAGTTAAGCTCCAAGCGCAGGGTAATTGAGGAGTCTATTAATCAGACTAGTTACATCACCGAGGCTATTGCTAGAGAAATATCCGGTGGATTGACTTC TCGTTGCGAGCAGGAACGTCTCAGACTGGAACACTATTTACCATTACTGGAAAATTTCATTTCTCATGCTGATTTGATTAGCAGCAACAGCCAGATGGTT CAGTGGACTTCACAACTCAAGATACGATGGAGTAGTGCTACTAGCTCGTCATCTTTCTTTGACCTTAGAGGTCCAAAGTTTTTTCAAATCGATAATTTGC GATTTGAGCTTGTTATGATCCATTTCCTCTATGGAGCGACACTACGGGAGAGGGCTTCGGAGTTTCTGTCAACAGATTTGAAGCAATCAGCCTTCATTTT CAGAGAAGCTGCTGGAGTTTTTCATTACCTGGCTCATGAGGTTATTCCATCTTTACAGTCACCAATATCTGCAGAAAGACCTTCAGAAGCTTCCTCGGCT TTGTCTGCTGCTATGAGTTTCATTTGTTTGGCTGAGGCCCAGGCGGTGTATACAAGGAGGGCGGAGGAAAAAGGTAATACTGGTTTCGGTGTTCTGGCAA AGCTGCACTATGGTGTTGTGGAATTGCTCAGTGAAGCCACAAGTGCTATACACTCAGGGACTGGAGAAGGCAAGACTATTTCATCACGGTTTTTGGAGTT TATATCATCTTGCAAAGCACTACATGAGTTACGAAGTAAAAAACACCTCGCAGAAGGTTTAAGGAACGACGGCCAAGTTGGTGTTTCTGTTGGAGTTCTT TGTGATGCACTGATCAGTTCAAAAAAGAAAACGCCAGGGGAGGATTCATGGAAAGCTGTTTTTAAGAATGAAATTGAAATTGTTGCAAATACACTTAGGA AATTTGAAAATGAGAACGAGTTTGTTTGGCATGAAAAGATTCCTCATGGGGATGAGCTGCCATCTCCCCAAGGTATCAAAATTGTGGAGATTGTGCCCTT TAAGCCTAAAAAATGGGAGAGAGAACTTGCTTTCAAATTGTAG
AA sequence Show only first row Show all	>Potri.010G128700.1 pacid=42798847 polypeptide=Potri.010G128700.1.p locus=Potri.010G128700 ID=Potri.010G128700.1.v4.1 annot-version=v4.1 MMLQYRDLAKLKTKKIVFEDVIAARDSATLEHLKELSSKRRVIEESINQTSYITEAIAREISGGLTSRCEQERLRLEHYLPLLENFISHADLISSNSQMV QWTSQLKIRWSSATSSSSFFDLRGPKFFQIDNLRFELVMIHFLYGATLRERASEFLSTDLKQSAFIFREAAGVFHYLAHEVIPSLQSPISAERPSEASSA LSAAMSFICLAEAQAVYTRRAEEKGNTGFGVLAKLHYGVVELLSEATSAIHSGTGEGKTISSRFLEFISSCKALHELRSKKHLAEGLRNDGQVGVSVGVL CDALISSKKKTPGEDSWKAVFKNEIEIVANTLRKFENENEFVWHEKIPHGDELPSPQGIKIVEIVPFKPKKWERELAFKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13310			Endosomal targeting BRO1-like ...		Potri.010G128700 [exp]	0	1
AT5G66880		SNRK2-3, SNRK2....	SUCROSE NONFERMENTING 1 \(SNF1...		Potri.005G134400 [exp]	3.46	0.7752
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Potri.012G021400 [exp]	5.29	0.8174
AT3G01820			P-loop containing nucleoside t...		Potri.015G093200 [exp]	6.00	0.8100
AT1G02020			nitroreductase family protein ...		Potri.002G146100 [exp]	7.87	0.8162
AT1G56300			Chaperone DnaJ-domain superfam...		Potri.005G020300 [exp]	8.48	0.7525
AT1G18490			Protein of unknown function (D...		Potri.015G055600 [exp]	13.52	0.8137
AT4G32272			Nucleotide/sugar transporter f...		Potri.006G255400 [exp]	16.52	0.7284
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Potri.017G090600 [exp]	17.32	0.7878
AT4G15850		ATRH1	RNA helicase 1 (.1)		Potri.004G158000 [exp]	23.66	0.7679	ATRH1.1
AT4G13550			triglyceride lipases;triglycer...		Potri.010G062700 [exp]	23.91	0.7486

Compare expression of checked genes

Potri.010G128700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.