Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25570 851 / 0 Di-glucose binding protein with Leucine-rich repeat domain (.1) AT1G28340 288 / 7e-89 AtRLP4 receptor like protein 4 (.1) AT3G19230 136 / 4e-34 Leucine-rich repeat (LRR) family protein (.1) AT2G28960 134 / 2e-32 Leucine-rich repeat protein kinase family protein (.1) AT2G14440 134 / 2e-32 Leucine-rich repeat protein kinase family protein (.1) AT3G46400 133 / 2e-32 Leucine-rich repeat protein kinase family protein (.1) AT2G28990 127 / 2e-30 Leucine-rich repeat protein kinase family protein (.1) AT4G29990 124 / 3e-29 Leucine-rich repeat transmembrane protein kinase protein (.1) AT1G49100 122 / 1e-28 Leucine-rich repeat protein kinase family protein (.1) AT1G67720 119 / 1e-27 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G117000 [exp] 1078 / 0 AT1G25570 816 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Potri.011G056800 [exp] 303 / 2e-94 AT1G28340 931 / 0.0 receptor like protein 4 (.1) Potri.004G047300 [exp] 297 / 4e-92 AT1G28340 928 / 0.0 receptor like protein 4 (.1) Potri.009G102300 [exp] 123 / 1e-29 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G132100 [exp] 124 / 2e-29 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.016G084900 [exp] 120 / 3e-28 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.002G242700 [exp] 120 / 5e-28 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G094700 [exp] 118 / 2e-27 AT4G29990 652 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.010G052800 [exp] 112 / 1e-25 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041488 [exp] 934 / 0 AT1G25570 880 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Lus10034275 [exp] 915 / 0 AT1G25570 874 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Lus10015417 [exp] 285 / 1e-86 AT1G28340 902 / 0.0 receptor like protein 4 (.1) Lus10013994 [exp] 278 / 5e-85 AT1G28340 908 / 0.0 receptor like protein 4 (.1) Lus10015320 [exp] 271 / 1e-82 AT1G28340 895 / 0.0 receptor like protein 4 (.1) Lus10025849 [exp] 128 / 1e-30 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10019907 [exp] 118 / 2e-27 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10015057 [exp] 116 / 7e-27 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10023166 [exp] 112 / 2e-25 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10025926 [exp] 108 / 3e-24 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.010G129300.1 pacid=42798253 polypeptide=Potri.010G129300.1.p locus=Potri.010G129300 ID=Potri.010G129300.1.v4.1 annot-version=v4.1 ATGTCTCTTCTTTTCTTCATCTTCTCTCTCCCTCTCCTCCTCTCCCCTTCCCTCTCCTTTTCCTTTGGTAATGCTTCATACTTCATAGACTGTGGCGGTT CTACAAACACAACCGATCCATTCAACACAATATGGCTTTCCGACCGTTACTTCACTGGAGGAGCCATCTCTGTAGTGTCGGAGCCACTCCACTTCCGCTA TCCTCAAGAAAAAAATCTTCGCTTCTTCCCCCTCTCTTCCGGTAAAAAAAACTGCTACATTTTGCCTCTCCCTAGCGGCCGTTACTACTTCCGTACGTTC ACTGTCTACGACAACTATGATGGCAAGTCCCACTCTCCTTCATTCGACGCATCCGTCGAGGGTACTGTCGTCTTTTCCTGGCGTTCTCCTTGGCCGGAGA ACCTCGCTCGTGACGGCGCGTACTCCGATCTCTTCGCGTTTGTCAAAGACGGTGAAGCGGATGTTTGTTTTTACAGTATTGCCACTGACCCTCCCGTCAT TGGATCCCTTGAAGTCCGTCAAATCGATCCGTCATCTTACGATTCCGCAACAATCGGCGATAAGTTCATCCTCGTTAATTACGGCCGTTTATCCTGCGGG TCCAACCAGTGGGGCCCAGGGTTCAGCAACGACACTGATGATTTCGGCCGAGCATGGCAGTCCGACTCCGTACTCCGAACTCTAAACACGACAAAAATAA TCCACTCCCTCTCCACACGAGAAACCATAACCGGCACCAATCAGCCACCGAATTTTTTTCCTGCGAAGCTTTACCAAACGGCGGTTACTGGAAATGGAAT ACTCGAGTACGCACTGTCGGTCGATGCGAAATTGGATTATGTGTTGTGGTTTCATTTCGCAGAGATTGATTCGAGTGTGAAGCAGAAAGCGGAGAGAGTG TTTGATGTGGTGGTGAATGAGAAGAATGTGAAGAGGGTCGACGTTTTCGAGGAAGTTGGGAGTTTTGCAGCTTATAGTTTGAGTTATACAGTGCATAATT TGAGCAGTACTGTGTTGACTGTGAAGTTTGTGCCAGTGATTGGCGCTCCGATTGTTAGTGGAATTGAGAATTATGCTTTGATTCCTAATGATCTCTCCAC CGCGCCGGAGCAAGTGGTGGCCATGAGAGCATTGAAAGAGTCGTTGAGAGTTCCTGATAGAATGGGATGGAATGGGGATCCTTGTGCTCCTACTAGCTGG GATGCCTGGGAAGGAGTTACATGCCATCCCAACAAAGATGAAACTGCACTCGTGATATCGCAAATTGATCTTGGAAGTCAAGGCTTGAAAGGGAGTATAA GTGAGCAGATTACTCTTTTGTCGAACTTGGTAACCCTGAATTTGAGTACTAATTCTTTGGGAGGAACTCTACCATCAGGACTAGGTCAACAATCTCTTGT ACGGCTGGATTTGTCAAACAATCAATTCTCAGGTCCTATACCGGAAAGTCTAGCTTTGGCAACTCATCTGCAACTTGTGATGTTGAATGGTAACTCATTG GAAGGGCGGGTACCAGAGGAACTTTATTCAATTGGTGTGCATGGTGGAGCTATTGATCTATCAGGTAACAAAGGGTTGTGTGGAGTACCATCTTTGCCAC AATGCTCTCTTTTCTGGGATAATGGTCGCTTGTCCACTGGTGGTAAAATTGCTATAGGCTTATCCTGCCTAGTATTTGTTTGTTTGCTTGTATTGGGATA CCTAATCTGCATCAGGAGGCGTAGACATGATTATGAATTTGCTCCACCTCACGATCTAATGTCAATGGCTGCCAAGAGAAACAGGTACCAGAGGCAGAAG TCCTTGATGCTTCTTGAAATGGAGAGCCAACATGCCAAAGGATTGCCATCGCCTTATGGTCCCCAATAA
AA sequence Show only first row Show all	>Potri.010G129300.1 pacid=42798253 polypeptide=Potri.010G129300.1.p locus=Potri.010G129300 ID=Potri.010G129300.1.v4.1 annot-version=v4.1 MSLLFFIFSLPLLLSPSLSFSFGNASYFIDCGGSTNTTDPFNTIWLSDRYFTGGAISVVSEPLHFRYPQEKNLRFFPLSSGKKNCYILPLPSGRYYFRTF TVYDNYDGKSHSPSFDASVEGTVVFSWRSPWPENLARDGAYSDLFAFVKDGEADVCFYSIATDPPVIGSLEVRQIDPSSYDSATIGDKFILVNYGRLSCG SNQWGPGFSNDTDDFGRAWQSDSVLRTLNTTKIIHSLSTRETITGTNQPPNFFPAKLYQTAVTGNGILEYALSVDAKLDYVLWFHFAEIDSSVKQKAERV FDVVVNEKNVKRVDVFEEVGSFAAYSLSYTVHNLSSTVLTVKFVPVIGAPIVSGIENYALIPNDLSTAPEQVVAMRALKESLRVPDRMGWNGDPCAPTSW DAWEGVTCHPNKDETALVISQIDLGSQGLKGSISEQITLLSNLVTLNLSTNSLGGTLPSGLGQQSLVRLDLSNNQFSGPIPESLALATHLQLVMLNGNSL EGRVPEELYSIGVHGGAIDLSGNKGLCGVPSLPQCSLFWDNGRLSTGGKIAIGLSCLVFVCLLVLGYLICIRRRRHDYEFAPPHDLMSMAAKRNRYQRQK SLMLLEMESQHAKGLPSPYGPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25570			Di-glucose binding protein wit...		Potri.010G129300 [exp]	0	1
AT3G06540		AthREP	Rab escort protein (.1)		Potri.005G028900 [exp]	5.65	0.7050
AT3G59780			Rhodanese/Cell cycle control p...		Potri.019G098001 [exp]	10.58	0.7228
AT3G14172			unknown protein		Potri.013G091900 [exp]	11.40	0.6884
AT1G68890			magnesium ion binding;thiamin ...		Potri.010G135500 [exp]	12.00	0.7244
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Potri.010G070400 [exp]	14.00	0.6877
AT4G37940	MADS	AGL21	AGAMOUS-like 21 (.1)		Potri.001G284301 [exp]	18.33	0.7130
AT5G42320			Zn-dependent exopeptidases sup...		Potri.002G010800 [exp]	19.44	0.6365
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Potri.003G129000 [exp]	20.97	0.6909	YDA.1
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Potri.015G049500 [exp]	25.61	0.6670	SCD1.3
AT3G45890		RUS1	ROOT UVB SENSITIVE 1, Protein ...		Potri.003G033450 [exp]	26.83	0.6901

Compare expression of checked genes

Potri.010G129300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.