Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13250 521 / 0 GATL3 galacturonosyltransferase-like 3 (.1) AT3G06260 441 / 4e-156 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) AT4G02130 428 / 7e-151 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT1G24170 423 / 3e-148 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G02720 411 / 4e-144 GATL5 galacturonosyltransferase 5 (.1.2) AT1G70090 411 / 1e-143 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT3G62660 407 / 1e-142 GATL7 galacturonosyltransferase-like 7 (.1) AT1G19300 400 / 1e-139 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G28340 399 / 2e-139 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT3G50760 391 / 2e-136 GATL2 galacturonosyltransferase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G116900 [exp] 624 / 0 AT1G13250 509 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G018100 [exp] 434 / 3e-153 AT3G06260 533 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Potri.014G125000 [exp] 412 / 3e-144 AT3G62660 596 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.002G200200 [exp] 412 / 3e-144 AT3G62660 593 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.014G040300 [exp] 411 / 4e-144 AT1G19300 489 / 1e-174 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.010G038300 [exp] 412 / 5e-144 AT1G70090 580 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.010G242300 [exp] 406 / 3e-142 AT3G06260 524 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Potri.007G031700 [exp] 405 / 6e-142 AT3G50760 459 / 5e-163 galacturonosyltransferase-like 2 (.1) Potri.005G128000 [exp] 401 / 3e-140 AT3G50760 463 / 9e-165 galacturonosyltransferase-like 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034274 [exp] 536 / 0 AT1G13250 489 / 9e-175 galacturonosyltransferase-like 3 (.1) Lus10041489 [exp] 533 / 0 AT1G13250 491 / 2e-175 galacturonosyltransferase-like 3 (.1) Lus10034012 [exp] 451 / 5e-160 AT3G06260 522 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10012765 [exp] 450 / 1e-159 AT3G06260 519 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10002440 [exp] 421 / 9e-147 AT3G62660 597 / 0.0 galacturonosyltransferase-like 7 (.1) Lus10010727 [exp] 413 / 1e-144 AT1G70090 546 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10032728 [exp] 403 / 7e-141 AT1G19300 515 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10018801 [exp] 403 / 1e-140 AT1G19300 518 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10016301 [exp] 401 / 3e-140 AT1G19300 506 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10030821 [exp] 402 / 4e-140 AT1G70090 533 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.010G129400.1 pacid=42800091 polypeptide=Potri.010G129400.1.p locus=Potri.010G129400 ID=Potri.010G129400.1.v4.1 annot-version=v4.1 ATGTCACTCCTCTCCATCTTTCTCTTCCTAAACGCCGTCGTCTTTTCCGCGCACGGCTTATCAAGCGCCGAACTCCCCGCTTTTAGAGAAGCACCAGCAT TTCGAAACGGCAGAGAATGTCCCAAAACGACGTGGCTTTCATCACTCAACAACTACCACGATCCTTCCATTATTCACATTGCAATGACACTCGATGCCAC CTATCTCCGCGGCTCAGTCGCTGGAGTCCTATCGGTCCTCCAACACGCCGCCTGTCCTGAAAATGTAGTCTTCCACTTCATCGCTACTCACCGTCGTGCA GACCTCCGACGCACAATCACCTCCACATTCCCTTACCAAACCTTCCACCTCTACCACTTCAACACTGACCTAGTCAAAGGTAAAATCTCGTCCTCCATTC GCCGGGCCCTCGATCAACCGTTGAACTACGCGCGTATCTACCTCGCAGATCTTTTACCGATGTCCGTGCGGAGAATCATTTACTTCGATTCTGATTTAAT CTTGGTCGATGACGTGGCAAAGTTATGGAACATCAATTTAGGTGCACACGTACTTGGTGCCCCAGAATACTGCCACGCGAATTTTACGAATTATTTTAAT TCTCGATTTTGGTCCAATTCAGCGTGTGCGGCGTCGTTGAGAGGGAGGAGAGCGTGCTATTTCAACACGGGGGTGATGGTGATAGATTTAGGGAAATGGA GAGAAGGGAAATACACGGAAAGATTAGAGTACTGGATGAAAGTACAGAAGAAGTATAGGATTTACGAGCTGGGTTCGTTGCCTCCTTTTCTGCTTGTTTT TGCTGGTGACGTGGAGGGTGTTGGGCATAGATGGAATCAACACGGGCTAGGCGGTGATAATCTTGAAGGGTTGTGTAGGGATTTGCATCCTGGCCCGGTT AGTTTGTTACATTGGAGTGGTAAGGGCAAGCCATGGCTTAGGCTGGACTCTAAAAGACCGTGTCCGTTGGATTATTTATGGGCTCCTTATGATCTTTATC GTCATTCATCATTGTTTTGTGATAGCTAG
AA sequence Show only first row Show all	>Potri.010G129400.1 pacid=42800091 polypeptide=Potri.010G129400.1.p locus=Potri.010G129400 ID=Potri.010G129400.1.v4.1 annot-version=v4.1 MSLLSIFLFLNAVVFSAHGLSSAELPAFREAPAFRNGRECPKTTWLSSLNNYHDPSIIHIAMTLDATYLRGSVAGVLSVLQHAACPENVVFHFIATHRRA DLRRTITSTFPYQTFHLYHFNTDLVKGKISSSIRRALDQPLNYARIYLADLLPMSVRRIIYFDSDLILVDDVAKLWNINLGAHVLGAPEYCHANFTNYFN SRFWSNSACAASLRGRRACYFNTGVMVIDLGKWREGKYTERLEYWMKVQKKYRIYELGSLPPFLLVFAGDVEGVGHRWNQHGLGGDNLEGLCRDLHPGPV SLLHWSGKGKPWLRLDSKRPCPLDYLWAPYDLYRHSSLFCDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13250		GATL3	galacturonosyltransferase-like...		Potri.010G129400 [exp]	0	1
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Potri.008G190000 [exp]	1.73	0.8921
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Potri.005G245800 [exp]	2.23	0.8858	SMT1.2
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.003G161700 [exp]	3.00	0.8964	CYP51G5,CYP51.1
AT3G07210			unknown protein		Potri.002G245700 [exp]	3.16	0.8610
AT5G62890			Xanthine/uracil permease famil...		Potri.012G077400 [exp]	5.19	0.8637
AT4G23740			Leucine-rich repeat protein ki...		Potri.003G136100 [exp]	5.47	0.8962
AT3G11950		ATHST	TRAF-like superfamily protein ...		Potri.016G062900 [exp]	8.24	0.8433
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Potri.006G121700 [exp]	8.24	0.8901	Pt-TIP2.7
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.009G093900 [exp]	10.90	0.8681
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Potri.004G206600 [exp]	11.87	0.8173

Compare expression of checked genes

Potri.010G129400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.